MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-542-v2

Family name

MIR-542 (all species)

Seed

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-542

Paralogues

Eca-Mir-542-v1

Orthologues

Bta-Mir-542 Cfa-Mir-542-v2 Cja-Mir-542 Cpo-Mir-542 Dno-Mir-542-v2 Ete-Mir-542 Hsa-Mir-542-v2 Laf-Mir-542 Mml-Mir-542-v2 Mmr-Mir-542-v2 Mmu-Mir-542 Ocu-Mir-542-v2 Pab-Mir-542

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCA_002863925.1_EquCab3.0)

CM009179.1: 119915531-119915586 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-542-v2)

Mir-506-P29b CM009179.1: 119897644-119897700 [-] UCSC Ensembl
Mir-506-P35c-v1 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P35c-v2 CM009179.1: 119898154-119898210 [-] UCSC Ensembl
Mir-506-P28f3 CM009179.1: 119898661-119898716 [-] UCSC Ensembl
Mir-506-P30c2 CM009179.1: 119899177-119899232 [-] UCSC Ensembl
Mir-506-P28e2 CM009179.1: 119901226-119901285 [-] UCSC Ensembl
Mir-506-P35b1-v2 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P35b1-v1 CM009179.1: 119903093-119903149 [-] UCSC Ensembl
Mir-506-P28f2 CM009179.1: 119904407-119904462 [-] UCSC Ensembl
Mir-506-P30d CM009179.1: 119904923-119904978 [-] UCSC Ensembl
Mir-506-P28e1 CM009179.1: 119906900-119906959 [-] UCSC Ensembl
Mir-506-P30b1-v2 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P30b1-v1 CM009179.1: 119907412-119907467 [-] UCSC Ensembl
Mir-506-P29a2 CM009179.1: 119908248-119908304 [-] UCSC Ensembl
Mir-506-P35b2-v2 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P35b2-v1 CM009179.1: 119908765-119908821 [-] UCSC Ensembl
Mir-506-P28d2 CM009179.1: 119909277-119909332 [-] UCSC Ensembl
Mir-506-P33b2 CM009179.1: 119910132-119910192 [-] UCSC Ensembl
Mir-506-P35a-v2 CM009179.1: 119910651-119910707 [-] UCSC Ensembl
Mir-506-P35a-v1 CM009179.1: 119910654-119910704 [-] UCSC Ensembl
Mir-506-P33b1 CM009179.1: 119912012-119912072 [-] UCSC Ensembl
Mir-506-P28f1 CM009179.1: 119913038-119913093 [-] UCSC Ensembl
Mir-506-P30c1 CM009179.1: 119913554-119913609 [-] UCSC Ensembl
Mir-506-P28c-v1 CM009179.1: 119915529-119915588 [-] UCSC Ensembl
Mir-506-P28c-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-542-v2 CM009179.1: 119915531-119915586 [-] UCSC Ensembl
Mir-506-P29a1 CM009179.1: 119916886-119916942 [-] UCSC Ensembl
Mir-506-P28b CM009179.1: 119917914-119917969 [-] UCSC Ensembl
Mir-506-P34 CM009179.1: 119918769-119918825 [-] UCSC Ensembl
Mir-506-P28a CM009179.1: 119919773-119919828 [-] UCSC Ensembl
Mir-506-P33a CM009179.1: 119921797-119921853 [-] UCSC Ensembl
Mir-9142 CM009179.1: 119927864-119927920 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCACCCUGAGCCAUGUCAUGUGCAGUGCCCUGCCGGGAAGGUACUGAUCACUUAGCAUAUGUGUAAUUAGUACCUGUCCGGGUAGAGUAAUGCUCAAGAAGACCAUCAUUUUUGGA

Get precursor sequence

Structure

        10          20        30         40        50       
CCACCCUGAGCCAUGUCA--  U   G   C     G   -|         C  UUAGC 
                    UG GCA UGC CUGCC GGA AGGUACUGAU AC     \
                    AC CGU AUG GAUGG CCU UCCAUGAUUA UG     A
AGGUUUUUACUACCAGAAGA  U   A   A     G   G^         A  UGUAU 
    110       100        90        80        70        60

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ps	Bo	Ca	Em	En	En	En	En	En	En	En	Gl	He	He	Ho	Im	Ki	Li	Lo	Lu	Ma	Ma	Mi	Pl	Sp	Te	Tr	Ut	Ut	Yo

Star sequence

Eca-Mir-542-v2_5p*

mirBase accession

Sequence

0- UGCCGGGAAGGUACUGAUCAC -21

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Mature sequence

Eca-Mir-542-v2_3p

mirBase accession

Sequence

34- AAUUAGUACCUGUCCGGGUAGA -56

Get sequence