MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-542

Family name MIR-542 (all species)
Seed GUGACAG
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cfa-Mir-542-v2  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Dno-Mir-542-v2  Eca-Mir-542-v1  Eca-Mir-542-v2  Hsa-Mir-542-v1  Hsa-Mir-542-v2  Laf-Mir-542  Mml-Mir-542-v1  Mml-Mir-542-v2  Mmr-Mir-542-v1  Mmr-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v1  Ocu-Mir-542-v2  Pab-Mir-542  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(echTel2)		 JH980394: 620285-620341 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGCUCAUUGGCAAUCCAGACCUUAGGCAUUUCGGGGAUCCCUGUCAUGGGAUACCACUGCAUACUUGUGACAGAUUGAUAACUGAAAGGUUUAGGGCCUCUUGGUCUCCUAGUAACC
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Structure
        10          20        30        40          50       
GGCUCAUUGGCAAUCCA-- A        A      GG   C--|     UG  AUACCA 
                   G CCUUAGGC UUUCGG  AUC   CUGUCA  GG      \
                   C GGGAUUUG AAAGUC  UAG   GACAGU  UC      C
CCAAUGAUCCUCUGGUUCU C        G      AA   UUA^     GU  AUACGU 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Star sequence

Ete-Mir-542_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGGGAUCCCUGUCAUGGG -20
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Mature sequence

Ete-Mir-542_3p (predicted)
mirBase accessionNone
Sequence 
35- UGUGACAGAUUGAUAACUGAAA -57
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