MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-542

Family name MIR-542 (all species)
Seed CGGGGAU
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-542  Cfa-Mir-542-v1  Cfa-Mir-542-v2  Cpo-Mir-542  Dno-Mir-542-v1  Dno-Mir-542-v2  Eca-Mir-542-v1  Eca-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v1  Hsa-Mir-542-v2  Laf-Mir-542  Mml-Mir-542-v1  Mml-Mir-542-v2  Mmr-Mir-542-v1  Mmr-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v1  Ocu-Mir-542-v2  Pab-Mir-542  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021937.1: 126003574-126003632 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCGGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCGUGUCACGAGAUAUCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCGUCUUCAUAACAAA
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Structure
        10        20          30         40        50         
UCGGUCAAGGAUGCACAGAC--       AUC    GG   -|  G         AUAUCA 
                      CUCAGAC   UCGG  AUC AUC UGUCACGAG      \
                      GGGUCUG   AGUC  UAG UAG ACAGUGUUC      C
AAACAAUACUUCUGCUCACCGA       GAA    AA   U^  -         ACGUGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cja-Mir-542_5p
mirBase accessionNone
Sequence 
0- UCGGGGAUCAUCGUGUCACGAG -22
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Star sequence

Cja-Mir-542_3p*
mirBase accessionNone
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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