| MirGeneDB ID | Cja-Mir-542 |
|---|---|
| Family name | MIR-542 (all species) |
| Seed | CGGGGAU |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Bta-Mir-542 Cfa-Mir-542-v1 Cfa-Mir-542-v2 Cpo-Mir-542 Dno-Mir-542-v1 Dno-Mir-542-v2 Eca-Mir-542-v1 Eca-Mir-542-v2 Ete-Mir-542 Hsa-Mir-542-v1 Hsa-Mir-542-v2 Laf-Mir-542 Mml-Mir-542-v1 Mml-Mir-542-v2 Mmr-Mir-542-v1 Mmr-Mir-542-v2 Mmu-Mir-542 Ocu-Mir-542-v1 Ocu-Mir-542-v2 Pab-Mir-542 Rno-Mir-542-P1a Rno-Mir-542-P1b Rno-Mir-542-P1c |
| Node of Origin (locus) | Eutheria |
| Node of Origin (family) | Eutheria |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021937.1: 126003574-126003632 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCGGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCGUGUCACGAGAUAUCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCGUCUUCAUAACAAAGet precursor sequence |
| Structure | 10 20 30 40 50 UCGGUCAAGGAUGCACAGAC-- AUC GG -| G AUAUCA CUCAGAC UCGG AUC AUC UGUCACGAG \ GGGUCUG AGUC UAG UAG ACAGUGUUC C AAACAAUACUUCUGCUCACCGA GAA AA U^ - ACGUGU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-542_5p |
| mirBase accession | None |
| Sequence |
0- UCGGGGAUCAUCGUGUCACGAG -22
Get sequence
|
| Star sequence | Cja-Mir-542_3p* |
| mirBase accession | None |
| Sequence |
37- UGUGACAGAUUGAUAACUGAAA -59
Get sequence
|
