MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-542

Family name MIR-542 (all species)
Seed GUGACAG
Species Cow (Bos taurus)
MiRBase ID bta-mir-542
Paralogues
Orthologues Cfa-Mir-542-v1  Cfa-Mir-542-v2  Cpo-Mir-542  Dno-Mir-542-v1  Dno-Mir-542-v2  Ete-Mir-542  Hsa-Mir-542-v1  Hsa-Mir-542-v2  Mml-Mir-542-v1  Mml-Mir-542-v2  Mmu-Mir-542  Ocu-Mir-542-v1  Ocu-Mir-542-v2  Rno-Mir-542-P1a  Rno-Mir-542-P1b  Rno-Mir-542-P1c 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542)
Mir-450-P3 NC_037357.1: 18236226-18236283 [-] UCSC Ensembl
Mir-450-P2 NC_037357.1: 18236396-18236452 [-] UCSC Ensembl
Mir-450-P1 NC_037357.1: 18236541-18236597 [-] UCSC Ensembl
Mir-542 NC_037357.1: 18237457-18237515 [-] UCSC Ensembl
Mir-15-P2c NC_037357.1: 18242411-18242473 [-] UCSC Ensembl
Mir-15-P1c NC_037357.1: 18242762-18242820 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAGUCAAGGAUGCACAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCGCUCAUCUUCACAGCAAU
Get precursor sequence
Structure
        10        20          30        40        50         
UGAGUCAAGGAUGCACAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UAACGACACUUCUACUCGCCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-542_5p*

mirBase accessionMIMAT0013594
Sequence
0- UCGGGGAUCAUCAUGUCACGAG -22
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Proposed targets TargetScanVert: bta-miR-542-5p
Mature sequence

Bta-Mir-542_3p

mirBase accessionNone
Sequence
37- UGUGACAGAUUGAUAACUGAAA -59
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