MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-542-v1

Family name MIR-542 (all species)
Seed GUGACAG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-542
Paralogues Cfa-Mir-542-v2 
Orthologues Bta-Mir-542  Cja-Mir-542  Cpo-Mir-542  Dno-Mir-542-v1  Eca-Mir-542-v1  Ete-Mir-542  Hsa-Mir-542-v1  Laf-Mir-542  Mml-Mir-542-v1  Mmr-Mir-542-v1  Mmu-Mir-542  Ocu-Mir-542-v1  Pab-Mir-542 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chrX: 105178359-105178417 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-542-v1)		 Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGUCACAGAUGCGCAGACCUCAGACAUCUCGGGGAUCAUCAUGUCACGAGAUACCACUGUGCACUUGUGACAGAUUGAUAACUGAAAGGUCUGGGAGCCACUCAUCUUCAUAGCAAU
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Structure
        10        20          30        40        50         
GGGGUCACAGAUGCGCAGAC--|      AUC    GG    UCA         AUACCA 
                      CUCAGAC   UCGG  AUCA   UGUCACGAG      \
                      GGGUCUG   AGUC  UAGU   ACAGUGUUC      C
UAACGAUACUUCUACUCACCGA^      GAA    AA    UAG         ACGUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-542-v1_5p*
mirBase accessionNone
Sequence 
0- UCGGGGAUCAUCAUGUCACGAG -22
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Mature sequence

Cfa-Mir-542-v1_3p
mirBase accessionMIMAT0006747
Sequence 
37- UGUGACAGAUUGAUAACUGAAA -59
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Proposed targets TargetScanVert: cfa-miR-542
miRDB: MIMAT0006747