MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCG
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-503
Paralogues Cfa-Mir-15-P1a  Cfa-Mir-15-P1b  Cfa-Mir-15-P1c  Cfa-Mir-15-P1d  Cfa-Mir-15-P2a  Cfa-Mir-15-P2b  Cfa-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(canFam3_add)
chrX: 105183139-105183201 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACGUGGUGGCCCGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGGGCAAUCGGUGUUCUGGAGUAUUGUUUCUGCUGCCCGGGCAAGGCUGGGACUCCCGCACGGGCCCACC
Get precursor sequence
Structure
        10          20        30        40        50        60 
GGACGUGGUGGCCCGCA--|      G     UA                 G   UGGGCAA 
                   CUCAGCC UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUCGG ACGGG  CGUCGUCUUUGUUAUGA GUC       U
CCACCCGGGCACGCCCUCA^      A     CC                 G   UUGUGGC 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-15-P2c_5p

mirBase accessionMIMAT0006746
Sequence
0- UAGCAGCGGGAACAGUACUGCAG -23
Get sequence
Proposed targets TargetScanVert: cfa-miR-503
miRDB: MIMAT0006746
Star sequence

Cfa-Mir-15-P2c_3p*

mirBase accessionNone
Sequence
40- GGAGUAUUGUUUCUGCUGCCCGG -63
Get sequence