Mir-15-P2c

MirGeneDB ID

Cfa-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-503

Paralogues

Cfa-Mir-15-P1a Cfa-Mir-15-P1b Cfa-Mir-15-P1c Cfa-Mir-15-P1d Cfa-Mir-15-P2a Cfa-Mir-15-P2b Cfa-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(canFam3_add)

chrX: 105183139-105183201 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 chrX: 105177287-105177344 [-] UCSC Ensembl
Mir-450-P2 chrX: 105177456-105177512 [-] UCSC Ensembl
Mir-542-v1 chrX: 105178359-105178417 [-] UCSC Ensembl
Mir-542-v2 chrX: 105178360-105178416 [-] UCSC Ensembl
Mir-15-P2c chrX: 105183139-105183201 [-] UCSC Ensembl
Mir-15-P1c chrX: 105183436-105183494 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGACGUGGUGGCCCGCACUCAGCCGUGCCCUAGCAGCGGGAACAGUACUGCAGUGGGCAAUCGGUGUUCUGGAGUAUUGUUUCUGCUGCCCGGGCAAGGCUGGGACUCCCGCACGGGCCCACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGACGUGGUGGCCCGCA--|      G     UA                 G   UGGGCAA 
                   CUCAGCC UGCCC  GCAGCGGGAACAGUACU CAG       \
                   GGGUCGG ACGGG  CGUCGUCUUUGUUAUGA GUC       U
CCACCCGGGCACGCCCUCA^      A     CC                 G   UUGUGGC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-15-P2c_5p

mirBase accession

MIMAT0006746

Sequence

0- UAGCAGCGGGAACAGUACUGCAG -23

Get sequence

Proposed targets

TargetScanVert: cfa-miR-503
miRDB: MIMAT0006746

Star sequence

Cfa-Mir-15-P2c_3p*

mirBase accession

None

Sequence

40- GGAGUAUUGUUUCUGCUGCCCGG -63

Get sequence