MirGeneDB ID | Pab-Mir-15-P2c |
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Family name | MIR-15 (all species) |
Seed | AGCAGCG |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-15-P1a Pab-Mir-15-P1b Pab-Mir-15-P1c Pab-Mir-15-P1d Pab-Mir-15-P2a Pab-Mir-15-P2b Pab-Mir-15-P2d |
Orthologues | Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140567917-140567979 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | GGGACGCGGUGCCCGCGCUCAGCCGUGCCCUAGCAGCGGGAACAGUUCUGCAGUGAGCGAUUGGUGCUCUGGAGUAUUGUUUCCGCUGCCAGGGUAAGUCUGGGACUGCCGUUCGGGCCUACCGet precursor sequence |
Structure | 10 20 30 40 50 60 GGGACGCGGUGCCCGCG--| CCG A U G UGAGCGA CUCAG UGCCCU GCAGCGGGAACAGU CU CAG \ GGGUC AUGGGA CGUCGCCUUUGUUA GA GUC U CCAUCCGGGCUUGCCGUCA^ UGA C U G UCGUGGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Pab-Mir-15-P2c_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCGGGAACAGUUCUGCAG -23
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|
Star sequence | Pab-Mir-15-P2c_3p* (predicted) |
mirBase accession | None |
Sequence |
40- GGAGUAUUGUUUCCGCUGCCAGG -63
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