Mir-15-P2c1

MirGeneDB ID

Xla-Mir-15-P2c1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c2

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xtr-Mir-15-P2c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030738.1: 47316144-47316209 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAUUUUACAUGUGUUCUAGCAAUCCUGCUUUAGCAGCACGUAAAUACUGGAGUCCAUGACUAUAUCUGCACUCUCCAGUAUUACUUUGCUGCUAUAUUAAGAUUGCCAUAAGCUGCACAAGAAAAU

Get precursor sequence

Structure

        10          20        30         40        50        60  
GAUUUUACAUGUGUUCUA--      CUGCUU        C-|   A        UCCAUGACU 
                    GCAAUC      UAGCAGCA  GUAA UACUGGAG         A
                    CGUUAG      AUCGUCGU  CAUU AUGACCUC         U
UAAAAGAACACGUCGAAUAC      AAUUAU        UU^   -        UCACGUCUA 
    120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-15-P2c1_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAAUACUGGAG -22

Get sequence

Star sequence

Xla-Mir-15-P2c1_3p*

mirBase accession

None

Sequence

44- CCAGUAUUACUUUGCUGCUAUA -66

Get sequence