MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-15-P2c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-16c
Paralogues Tgu-Mir-15-P1a  Tgu-Mir-15-P1b  Tgu-Mir-15-P1c  Tgu-Mir-15-P2a  Tgu-Mir-15-P2b 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mdo-Mir-15-P2c-v1  Mdo-Mir-15-P2c-v2  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(TaeGut1_add)
4A: 6684842-6684906 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c)
Mir-15-P1c 4A: 6684432-6684489 [+] UCSC Ensembl
Mir-15-P2c 4A: 6684842-6684906 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGGCCGUGGAGAGCUGUCAGCAGUGCUCUAGCAGCACGUAAAUACUGGAGUUUGGGAUUGCCUGUUGCUCUCCAGUAUUGCAUUGCUGCUUUAGUGAGGCUGGAAAUUGGUCUCUGCUGCAGG
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Structure
        10          20        30        40        50        60  
GGAGGCCGUGGAGAGCUG--|    AG    CU       CGUA          UUUGGGAUU 
                    UCAGC  UGCU  AGCAGCA    AAUACUGGAG         \
                    GGUCG  GUGA  UCGUCGU    UUAUGACCUC         G
GGACGUCGUCUCUGGUUAAA^    GA    UU       UACG          UCGUUGUCC 
   120       110       100        90        80        70
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-15-P2c_5p

mirBase accessionMIMAT0014586
Sequence
0- UAGCAGCACGUAAAUACUGGAG -22
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Star sequence

Tgu-Mir-15-P2c_3p*

mirBase accessionNone
Sequence
43- CCAGUAUUGCAUUGCUGCUUUA -65
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