Mir-15-P2c-v2

MirGeneDB ID

Neu-Mir-15-P2c-v2

Family name

MIR-15 (all species)

Seed

UAGCAGC

Species

Tammar Wallaby (Notamacropus eugenii)

MiRBase ID

Paralogues

Neu-Mir-15-P1a Neu-Mir-15-P1c Neu-Mir-15-P1d Neu-Mir-15-P2a Neu-Mir-15-P2b Neu-Mir-15-P2c-v1 Neu-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_028372415.1_mMacEug1.pri)

CM051820.1: 56572367-56572429 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGGACUCCCAGUUUAAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUUAACUGGUUAAAUCCUCCAGUAUUGCCUUGCUGCUUGAGCGAGGUAGGAGCCUGGUUCAAUUGCCCCUC

Get precursor sequence

Structure

        10         20         30        40        50        60 
GAGGACUCCCAGUUUAA-    G-|  G   CCU       CGU   A      GUUAACUG 
                  GCUC  GCU UGC   AGCAGCA   CAA ACUGGA        \
                  CGAG  UGG GCG   UCGUCGU   GUU UGACCU        G
CUCCCCGUUAACUUGGUC    GA^  A   AGU       UCC   A      CCUAAAUU 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Br	Ce	Fi	Li	Mi	Mi	Mi	Mi	Mi	Ov	Se	Se	Te	Te	Te

Mature sequence

Neu-Mir-15-P2c-v2_5p

mirBase accession

None

Sequence

0- CUAGCAGCACGUCAAAACUGGA -22

Get sequence

Star sequence

Neu-Mir-15-P2c-v2_3p* (predicted)

mirBase accession

None

Sequence

41- CAGUAUUGCCUUGCUGCUUGAG -63

Get sequence