Mir-15-P2c

MirGeneDB ID

Loc-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG7: 45848046-45848108 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCAGUCCCGCGCGUCGCUGGCCGUGCUGUAGCAGCACGUACAUACUGGAGUGGCGCCGAUUGGGGUCUCCAGUGUUGGCGGAUCUGCUUCAGUAAGGCCAGCGCGGACCAUGGACCUGGAU

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Structure

        10          20        30         40        50        60
CCGCAGUCCCGCGCGUC--       G     U     CA-|  AC         UGGCGCC 
                   GCUGGCC UGCUG AGCAG   CGU  AUACUGGAG       G
                   CGACCGG AUGAC UCGUC   GCG  UGUGACCUC       A
UAGGUCCAGGUACCAGGCG       A     U     UAG^  GU         UGGGGUU 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P2c_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUACAUACUGGAG -22

Get sequence

Star sequence

Loc-Mir-15-P2c_3p*

mirBase accession

None

Sequence

40- CCAGUGUUGGCGGAUCUGCUUCA -63

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