Mir-15-P1c

MirGeneDB ID

Loc-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2c Loc-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG7: 45848213-45848270 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CUGGCGGGGAUGGUGGGCUUGCAGCGGCUGUAGCAGCACUACAUGGUUUGUAGUGACGAGGAGAUACAGACCAUGCGGAGCUGCCUCUGCGGCGCAAGCACGAGCGAGCGAGCGAGCG

Get precursor sequence

Structure

        10           20        30        40        50        
CUGGCGGGGAUGGUGGG---|    A  G  UGUA     A UA           GUGAC 
                    CUUGC GC GC    GCAGC C  CAUGGUUUGUA     G
                    GAACG CG CG    CGUCG G  GUACCAGACAU     A
GCGAGCGAGCGAGCGAGCAC^    -  G  UCUC     A GC           AGAGG 
      110       100         90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- UAGCAGCACUACAUGGUUUGUA -22

Get sequence

Star sequence

Loc-Mir-15-P1c_3p*

mirBase accession

None

Sequence

36- CAGACCAUGCGGAGCUGCCUCU -58

Get sequence