MirGeneDB 3.0

MirGeneDB ID

Eca-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-424
Paralogues Eca-Mir-15-P1a  Eca-Mir-15-P1b  Eca-Mir-15-P1d  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2c  Eca-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)
CM009179.1: 111021472-111021530 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-450-P3 CM009179.1: 111015235-111015292 [-] UCSC Ensembl
Mir-450-P2 CM009179.1: 111015405-111015461 [-] UCSC Ensembl
Mir-450-P1 CM009179.1: 111015538-111015594 [-] UCSC Ensembl
Mir-542-v1 CM009179.1: 111016323-111016381 [-] UCSC Ensembl
Mir-15-P2c CM009179.1: 111021117-111021179 [-] UCSC Ensembl
Mir-15-P1c CM009179.1: 111021472-111021530 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUCCCCCUUCGUUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUGAUUUAAACGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGCGGGGAAGUUGGAAGGUGGGGU
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Structure
        10         20         30        40        50         
CGAUCCCCCUUCGUUGA-   -|      A  C      AA             GUGAUU 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGGUUGAAG   C^      C  A      CG             GGCAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-15-P1c_5p

mirBase accessionMIMAT0013217
Sequence
0- CAGCAGCAAUUCAUGUUUUGAA -22
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Star sequence

Eca-Mir-15-P1c_3p*

mirBase accessionNone
Sequence
37- CAAAACGUGAGGCGCUGCUAUA -59
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