MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-195
Paralogues Eca-Mir-15-P1a  Eca-Mir-15-P1b  Eca-Mir-15-P1c  Eca-Mir-15-P1d  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009158.1: 50388634-50388694 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2d)		 Mir-15-P2d CM009158.1: 50388634-50388694 [-] UCSC Ensembl
Mir-15-P1d CM009158.1: 50388942-50389003 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUUGCCCACACCCAGCUCCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACUGGGAAGAGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUGCCAGGAGGGGC
Get precursor sequence
Structure
        10          20        30        40         50         
UUUGUUGCCCACACCCA--  UC     G  CU          A-|         CUGGGA 
                   GC  CCCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UG  GGGAC GA  UCGUCGUGUC  UUAUAACCGU      G
CGGGGAGGACCGUCGAGAG  GU     G  CC          GG^         CUGAGA 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-15-P2d_5p
mirBase accessionMIMAT0013027
Sequence 
0- UAGCAGCACAGAAAUAUUGGCA -22
Get sequence
Star sequence

Eca-Mir-15-P2d_3p*
mirBase accessionNone
Sequence 
38- CCAAUAUUGGCUGUGCUGCUCCA -61
Get sequence