Mir-15-P2d

MirGeneDB ID

Eca-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-195

Paralogues

Eca-Mir-15-P1a Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2b Eca-Mir-15-P2c

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009158.1: 50388634-50388694 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P2d CM009158.1: 50388634-50388694 [-] UCSC Ensembl
Mir-15-P1d CM009158.1: 50388942-50389003 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUUGCCCACACCCAGCUCCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACUGGGAAGAGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUGCCAGGAGGGGC

Get precursor sequence

Structure

        10          20        30        40         50         
UUUGUUGCCCACACCCA--  UC     G  CU          A-|         CUGGGA 
                   GC  CCCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UG  GGGAC GA  UCGUCGUGUC  UUAUAACCGU      G
CGGGGAGGACCGUCGAGAG  GU     G  CC          GG^         CUGAGA 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P2d_5p

mirBase accession

MIMAT0013027

Sequence

0- UAGCAGCACAGAAAUAUUGGCA -22

Get sequence

Star sequence

Eca-Mir-15-P2d_3p*

mirBase accession

None

Sequence

38- CCAAUAUUGGCUGUGCUGCUCCA -61

Get sequence