Mir-15-P1a

MirGeneDB ID

Eca-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Horse (Equus caballus)

MiRBase ID

eca-mir-15a

Paralogues

Eca-Mir-15-P1b Eca-Mir-15-P1c Eca-Mir-15-P1d Eca-Mir-15-P2a Eca-Mir-15-P2b Eca-Mir-15-P2c Eca-Mir-15-P2d

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cli-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_002863925.1_EquCab3.0)

CM009164.1: 21041772-21041830 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P1a CM009164.1: 21041772-21041830 [+] UCSC Ensembl
Mir-15-P2a CM009164.1: 21041912-21041976 [+] UCSC Ensembl
Mir-3613 CM009164.1: 21087975-21088033 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUUAAAAAAACAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAA

Get precursor sequence

Structure

        10          20        30        40        50         
UGUUUAAAAAAACAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er	Er

Mature sequence

Eca-Mir-15-P1a_5p

mirBase accession

MIMAT0013083

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Star sequence

Eca-Mir-15-P1a_3p*

mirBase accession

None

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence