MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Horse (Equus caballus)
MiRBase ID eca-mir-15a
Paralogues Eca-Mir-15-P1b  Eca-Mir-15-P1c  Eca-Mir-15-P1d  Eca-Mir-15-P2a  Eca-Mir-15-P2b  Eca-Mir-15-P2c  Eca-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009164.1: 21041772-21041830 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a)		 Mir-15-P1a CM009164.1: 21041772-21041830 [+] UCSC Ensembl
Mir-15-P2a CM009164.1: 21041912-21041976 [+] UCSC Ensembl
Mir-3613 CM009164.1: 21087975-21088033 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUUUAAAAAAACAAAACCUUGGAGUAAAGUAGCAGCACAUAAUGGUUUGUGGAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUCUGAUCUUCUGAAGAAA
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Structure
        10          20        30        40        50         
UGUUUAAAAAAACAAAA--|    GAGUAAAGUA        UA         GGAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AAAGAAGUCUUCUAGUCUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-15-P1a_5p
mirBase accessionMIMAT0013083
Sequence 
0- UAGCAGCACAUAAUGGUUUGUG -22
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Star sequence

Eca-Mir-15-P1a_3p*
mirBase accessionNone
Sequence 
37- CAGGCCAUAUUGUGCUGCCUCA -59
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