Mir-15-P1a

MirGeneDB ID

Cli-Mir-15-P1a

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-15a

Paralogues

Cli-Mir-15-P1b Cli-Mir-15-P1c Cli-Mir-15-P2a Cli-Mir-15-P2b Cli-Mir-15-P2c

Orthologues

Ami-Mir-15-P1a Bta-Mir-15-P1a Cfa-Mir-15-P1a Cin-Mir-15-P1 Cja-Mir-15-P1a Cmi-Mir-15-P1a Cpi-Mir-15-P1a Cpo-Mir-15-P1a Dno-Mir-15-P1a Dre-Mir-15-P1a1 Dre-Mir-15-P1a2 Eca-Mir-15-P1a Ete-Mir-15-P1a Gga-Mir-15-P1a Gja-Mir-15-P1a Gmo-Mir-15-P1a2 Hsa-Mir-15-P1a Laf-Mir-15-P1a Lch-Mir-15-P1a Loc-Mir-15-P1a Mal-Mir-15-P1a2 Mdo-Mir-15-P1a Mml-Mir-15-P1a Mmr-Mir-15-P1a Mmu-Mir-15-P1a Mun-Mir-15-P1a Neu-Mir-15-P1a Oan-Mir-15-P1a Ocu-Mir-15-P1a Pab-Mir-15-P1a Rno-Mir-15-P1a Sha-Mir-15-P1a Spt-Mir-15-P1a Sto-Mir-15-P1a Tgu-Mir-15-P1a Tni-Mir-15-P1a2 Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xtr-Mir-15-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(colLiv2)

scaffold17: 15185606-15185664 [-]

Clustered miRNAs
(< 50kb from Mir-15-P1a)

Mir-15-P2a scaffold17: 15185461-15185523 [-]
Mir-15-P1a scaffold17: 15185606-15185664 [-]

Precursor
(pre-Mir +30nt flank)

UUGAAGUAUGGUAGACACCUUGGCAUAACGUAGCAGCACAUAAUGGUUUGUGGGUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAAAAUACAAGGAUUUCAUCGUCCUGAAGAG

Get precursor sequence

Structure

        10          20        30        40        50         
UUGAAGUAUGGUAGACA--|    GCAUAACGUA        UA         GGGUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
GAGAAGUCCUGCUACUUUA^    AUAAAAACUC        UA         UGGAAAA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-15-P1a_5p

mirBase accession

MIMAT0038410

Sequence

0- UAGCAGCACAUAAUGGUUUGUG -22

Get sequence

Star sequence

Cli-Mir-15-P1a_3p*

mirBase accession

MIMAT0038411

Sequence

37- CAGGCCAUAUUGUGCUGCCUCA -59

Get sequence