MirGeneDB 3.0

MirGeneDB ID

Xtr-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-15a
Paralogues Xtr-Mir-15-P1b  Xtr-Mir-15-P1c  Xtr-Mir-15-P2a  Xtr-Mir-15-P2b  Xtr-Mir-15-P2c 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(xenTro9_add)
chr2: 146575536-146575594 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1a)
Mir-15-P2a chr2: 146575403-146575458 [-] UCSC Ensembl
Mir-15-P1a chr2: 146575536-146575594 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGGUGGUUAAAAUGACCUUGACGUAAAGUAGCAGCACAUAAUGGUUUGUGGGUUACACAGAGGUGCAGGCCAUACUGUGCUGCCGCCAAAACACAAGGCUUUCCUCCUCUCAAGUGG
Get precursor sequence
Structure
        10          20        30        40        50         
AAAGGUGGUUAAAAUGA--|    ACGUAAA UA        UA         GGGUUAC 
                   CCUUG       G  GCAGCACA  AUGGUUUGU       \
                   GGAAC       C  CGUCGUGU  UACCGGACG       A
GGUGAACUCUCCUCCUUUC^    ACAAAAC GC        CA         UGGAGAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-15-P1a_5p

mirBase accessionMIMAT0003560
Sequence
0- UAGCAGCACAUAAUGGUUUGUG -22
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Proposed targets TargetScanVert: xtr-miR-15a
Star sequence

Xtr-Mir-15-P1a_3p*

mirBase accessionNone
Sequence
37- CAGGCCAUACUGUGCUGCCGCC -59
Get sequence