MirGeneDB 3.0

MirGeneDB ID

Ete-Mir-15-P1a

Family name MIR-15 (all species)
Seed AGCAGCA
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-15-P1b  Ete-Mir-15-P1c  Ete-Mir-15-P1d  Ete-Mir-15-P2a  Ete-Mir-15-P2b  Ete-Mir-15-P2c  Ete-Mir-15-P2d 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Dre-Mir-15-P1a1  Dre-Mir-15-P1a2  Eca-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Gmo-Mir-15-P1a2  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mal-Mir-15-P1a2  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Tni-Mir-15-P1a2  Xla-Mir-15-P1a3  Xla-Mir-15-P1a4  Xtr-Mir-15-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(echTel2)
JH980311: 7342911-7342969 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UUUUUAAAAAAGCAAAACCUUGGAGUAACGUAGCAGCACAUAAUGGUUUGUGAAUUUUGAAAAGGUGCAGGCCAUAUUGUGCUGCCUCAAGAAUACAAGGAUCUGAUCUUCUGAAGAGA
Get precursor sequence
Structure
        10          20        30        40        50         
UUUUUAAAAAAGCAAAA--|    GAGUAACGUA        UA         GAAUUUU 
                   CCUUG          GCAGCACA  AUGGUUUGU       \
                   GGAAC          CGUCGUGU  UACCGGACG       G
AGAGAAGUCUUCUAGUCUA^    AUAAGAACUC        UA         UGGAAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ete-Mir-15-P1a_5p

mirBase accessionNone
Sequence
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
Star sequence

Ete-Mir-15-P1a_3p*

mirBase accessionNone
Sequence
37- CAGGCCAUAUUGUGCUGCCUCA -59
Get sequence