MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-15-P1a3

Family name MIR-15 (all species)
Seed AGCAGCA
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-15-P1a4  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xla-Mir-15-P2a3  Xla-Mir-15-P2a4  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2 
Orthologues Ami-Mir-15-P1a  Bta-Mir-15-P1a  Cfa-Mir-15-P1a  Cin-Mir-15-P1  Cja-Mir-15-P1a  Cli-Mir-15-P1a  Cmi-Mir-15-P1a  Cpi-Mir-15-P1a  Cpo-Mir-15-P1a  Dno-Mir-15-P1a  Eca-Mir-15-P1a  Ete-Mir-15-P1a  Gga-Mir-15-P1a  Gja-Mir-15-P1a  Hsa-Mir-15-P1a  Laf-Mir-15-P1a  Lch-Mir-15-P1a  Loc-Mir-15-P1a  Mdo-Mir-15-P1a  Mml-Mir-15-P1a  Mmr-Mir-15-P1a  Mmu-Mir-15-P1a  Mun-Mir-15-P1a  Neu-Mir-15-P1a  Oan-Mir-15-P1a  Ocu-Mir-15-P1a  Pab-Mir-15-P1a  Rno-Mir-15-P1a  Sha-Mir-15-P1a  Spt-Mir-15-P1a  Sto-Mir-15-P1a  Tgu-Mir-15-P1a  Xtr-Mir-15-P1a 
Node of Origin (locus) X. laevis
Node of Origin (family) Olfactores
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030726.1: 152016098-152016156 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACGGUGGUUAAAAUGACCUUGAGGUAAAGUAGCAGCACAUAAUGGUUUGUGGGUUACACAGAGGUGCAGGCCAUACUGUGCUGCCGCCAAAACACAAGGCUUUCCUCCUCUCAAGUAC
Get precursor sequence
Structure
        10          20         30        40        50         
CACGGUGGUUAAAAUGA--|    AG  AAA- UA        UA         GGGUUAC 
                   CCUUG  GU    G  GCAGCACA  AUGGUUUGU       \
                   GGAAC  CA    C  CGUCGUGU  UACCGGACG       A
CAUGAACUCUCCUCCUUUC^    A-  AAAC GC        CA         UGGAGAC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-15-P1a3_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUAAUGGUUUGUG -22
Get sequence
Star sequence

Xla-Mir-15-P1a3_3p*
mirBase accessionNone
Sequence 
37- CAGGCCAUACUGUGCUGCCGCC -59
Get sequence