MirGeneDB ID | Xla-Mir-15-P1c1 |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-15c
|
Paralogues |
Xla-Mir-15-P1a3
Xla-Mir-15-P1a4
Xla-Mir-15-P1b1
Xla-Mir-15-P1b2
Xla-Mir-15-P1c2
Xla-Mir-15-P2a3
Xla-Mir-15-P2a4
Xla-Mir-15-P2b1
Xla-Mir-15-P2b2
Xla-Mir-15-P2c1
Xla-Mir-15-P2c2
|
Orthologues |
Aca-Mir-15-P1c
Ami-Mir-15-P1c
Bta-Mir-15-P1c
Cfa-Mir-15-P1c
Cin-Mir-15-P1
Cli-Mir-15-P1c
Cmi-Mir-15-P1c
Cpi-Mir-15-P1c
Cpo-Mir-15-P1c
Dno-Mir-15-P1c
Ete-Mir-15-P1c
Gga-Mir-15-P1c
Gja-Mir-15-P1c
Hsa-Mir-15-P1c
Lch-Mir-15-P1c
Loc-Mir-15-P1c
Loc-Mir-15-P1c-as
Mdo-Mir-15-P1c-v1
Mdo-Mir-15-P1c-v2
Mml-Mir-15-P1c
Mmu-Mir-15-P1c-v1
Mmu-Mir-15-P1c-v2
Mmu-Mir-15-P1c-v3
Mun-Mir-15-P1c
Oan-Mir-15-P1c
Ocu-Mir-15-P1c
Pbv-Mir-15-P1c
Sha-Mir-15-P1c
Spt-Mir-15-P1c
Tgu-Mir-15-P1c
Xtr-Mir-15-P1c
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Olfactores
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030738.1: 47317477-47317534 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGACCAGAUUCUAGAUGCUUUGAGGUGAUCUAGCAGCACAUCAUGGUUUGUAGAAACAAGGAGAUACAGACCAUUCUGAGCUGCCUCUUGACCUCAGAGAAAAGCCAAAGCACCCAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CGACCAGAUUCUAGAUG--| GAUCUA A UC GAAAC
CUUUGAGGU GCAGC CA AUGGUUUGUA A
GAGACUCCA CGUCG GU UACCAGACAU A
GUACCCACGAAACCGAAAA^ GUUCUC A CU AGAGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Xla-Mir-15-P1c1_5p |
mirBase accession | MIMAT0011140 |
Sequence |
0- UAGCAGCACAUCAUGGUUUGUA -22
Get sequence
|
Star sequence |
Xla-Mir-15-P1c1_3p* |
mirBase accession | None |
Sequence |
36- CAGACCAUUCUGAGCUGCCUCU -58
Get sequence
|