Mir-15-P1c1

MirGeneDB ID

Xla-Mir-15-P1c1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-15c

Paralogues

Xla-Mir-15-P1a3 Xla-Mir-15-P1a4 Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xla-Mir-15-P1c2 Xla-Mir-15-P2a3 Xla-Mir-15-P2a4 Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xla-Mir-15-P2c1 Xla-Mir-15-P2c2

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xtr-Mir-15-P1c

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030738.1: 47317477-47317534 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGACCAGAUUCUAGAUGCUUUGAGGUGAUCUAGCAGCACAUCAUGGUUUGUAGAAACAAGGAGAUACAGACCAUUCUGAGCUGCCUCUUGACCUCAGAGAAAAGCCAAAGCACCCAUG

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Structure

        10          20        30        40        50        
CGACCAGAUUCUAGAUG--|        GAUCUA     A  UC          GAAAC 
                   CUUUGAGGU      GCAGC CA  AUGGUUUGUA     A
                   GAGACUCCA      CGUCG GU  UACCAGACAU     A
GUACCCACGAAACCGAAAA^        GUUCUC     A  CU          AGAGG 
      110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-15-P1c1_5p

mirBase accession

MIMAT0011140

Sequence

0- UAGCAGCACAUCAUGGUUUGUA -22

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Star sequence

Xla-Mir-15-P1c1_3p*

mirBase accession

None

Sequence

36- CAGACCAUUCUGAGCUGCCUCU -58

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