Mir-15-P1c

MirGeneDB ID

Pab-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Sumatran orangutan (Pongo abelii)

MiRBase ID

Paralogues

Pab-Mir-15-P1a Pab-Mir-15-P1b Pab-Mir-15-P1d Pab-Mir-15-P2a Pab-Mir-15-P2b Pab-Mir-15-P2c Pab-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)

CM054702.2: 140568229-140568287 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAUUCCCCUUCAUUGACUCCGAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGUUCUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGUGGGGAAGGUAGAAGGUGGGGU

Get precursor sequence

Structure

        10         20         30        40        50         
CGAUUCCCCUUCAUUGA-   -|      A  C      AA             GUGUUC 
                  CUC CGAGGGG UA AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UGGGGUGGAAGAUGGAAG   U^      C  A      CG             GGUAAA 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Br	Br	Li	Li

Mature sequence

Pab-Mir-15-P1c_5p

mirBase accession

None

Sequence

0- CAGCAGCAAUUCAUGUUUUGAA -22

Get sequence

Star sequence

Pab-Mir-15-P1c_3p*

mirBase accession

None

Sequence

37- CAAAACGUGAGGCGCUGCUAUA -59

Get sequence