MirGeneDB ID | Pab-Mir-15-P1c |
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Family name | MIR-15 (all species) |
Seed | AGCAGCA |
Species | Sumatran orangutan (Pongo abelii) |
MiRBase ID | |
Paralogues | Pab-Mir-15-P1a Pab-Mir-15-P1b Pab-Mir-15-P1d Pab-Mir-15-P2a Pab-Mir-15-P2b Pab-Mir-15-P2c Pab-Mir-15-P2d |
Orthologues | Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054702.2: 140568229-140568287 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | CGAUUCCCCUUCAUUGACUCCGAGGGGAUACAGCAGCAAUUCAUGUUUUGAAGUGUUCUAAAUGGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGUGGGGAAGGUAGAAGGUGGGGUGet precursor sequence |
Structure | 10 20 30 40 50 CGAUUCCCCUUCAUUGA- -| A C AA GUGUUC CUC CGAGGGG UA AGCAGC UUCAUGUUUUGAA \ GGG GCUCCCC AU UCGUCG GAGUGCAAAACUU U UGGGGUGGAAGAUGGAAG U^ C A CG GGUAAA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | No |
Motifs | UGUG in loop |
Mature sequence | Pab-Mir-15-P1c_5p |
mirBase accession | None |
Sequence |
0- CAGCAGCAAUUCAUGUUUUGAA -22
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|
Star sequence | Pab-Mir-15-P1c_3p* |
mirBase accession | None |
Sequence |
37- CAAAACGUGAGGCGCUGCUAUA -59
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