Mir-15-P1c

MirGeneDB ID

Cpo-Mir-15-P1c

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-424

Paralogues

Cpo-Mir-15-P1a Cpo-Mir-15-P1b Cpo-Mir-15-P1d Cpo-Mir-15-P2a Cpo-Mir-15-P2b Cpo-Mir-15-P2c Cpo-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_128: 2879319-2879377 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P1c)

Mir-450-P3 scaffold_128: 2872948-2873006 [-] UCSC
Mir-450-P2 scaffold_128: 2873103-2873159 [-] UCSC
Mir-450-P1 scaffold_128: 2873272-2873328 [-] UCSC
Mir-542 scaffold_128: 2874159-2874217 [-] UCSC
Mir-15-P2c scaffold_128: 2878959-2879021 [-] UCSC
Mir-15-P1c scaffold_128: 2879319-2879377 [-] UCSC

Precursor
(pre-Mir +30nt flank)

AGAUCCCCCUUCGCUGACUCCGAGGGGAUGCAGCAGCAAUUCAUGUUUUGAAGUAUUCUAAACUGUUCAAAACGUGAGGCGCUGCUAUACCCCCUCGUGGGAAAUUAGAAAGUGGGGAU

Get precursor sequence

Structure

        10         20         30        40        50         
AGAUCCCCCUUCGCUGA-   -|      A  C      AA             GUAUUC 
                  CUC CGAGGGG UG AGCAGC  UUCAUGUUUUGAA      \
                  GGG GCUCCCC AU UCGUCG  GAGUGCAAAACUU      U
UAGGGGUGAAAGAUUAAA   U^      C  A      CG             GUCAAA 
       110       100        90        80        70        60