MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-15b
Paralogues Pbv-Mir-15-P1b  Pbv-Mir-15-P2a  Pbv-Mir-15-P2b  Pbv-Mir-15-P2c 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE958055.1: 57374-57431 [-]
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-15-P2c KE958055.1: 56683-56743 [-]
Mir-15-P1c KE958055.1: 57374-57431 [-]
Precursor
(pre-Mir +30nt flank)
CUCACUCCGAUGGCCAACCUUGAGGUGGCGUAGCAGCACGACAUGGUUUGUAGAGAAAAGAAGAUACAGACCGUUCUGGGCUGCCUCAUGACCUCAAGGGUUAAGUCCAAGAUAGACG
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Structure
        10          20        30        40        50        
CUCACUCCGAUGGCCAA--|        GGCGUA     A  AC          GAGAA 
                   CCUUGAGGU      GCAGC CG  AUGGUUUGUA     A
                   GGAACUCCA      CGUCG GU  UGCCAGACAU     A
GCAGAUAGAACCUGAAUUG^        GUACUC     G  CU          AGAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Pbv-Mir-15-P1c_5p

mirBase accessionMIMAT0038831
Sequence
0- UAGCAGCACGACAUGGUUUGUA -22
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Star sequence

Pbv-Mir-15-P1c_3p*

mirBase accessionMIMAT0038832
Sequence
36- CAGACCGUUCUGGGCUGCCUCA -58
Get sequence