MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-15-P1c

Family name MIR-15 (all species)
Seed AGCAGCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-15b
Paralogues Aca-Mir-15-P1b  Aca-Mir-15-P2b  Aca-Mir-15-P2c  Aca-Mir-15-P2d 
Orthologues Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xla-Mir-15-P1c1  Xla-Mir-15-P1c2  Xtr-Mir-15-P1c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(anoCar2)
GL343761.1: 167260-167318 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c)
Mir-15-P1c GL343761.1: 167260-167318 [+] UCSC Ensembl
Mir-15-P2c GL343761.1: 168393-168458 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGAUUGUCCUUUGGGCCCGGAGGUGAUGUAGCAGCACAACAUGGUUUGUAGGGACACAGAAGAUACAGACCGUUCUGGGCUGCCUCAUUACCUUUUGGGAUUAAGACACGAAAAGGG
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Structure
        10         20         30        40        50         
UUGGAUUGUCCUUUGGG-   -|         UA     A  AC          GGGACA 
                  CCC GGAGGUGAUG  GCAGC CA  AUGGUUUGUA      \
                  GGG UUUCCAUUAC  CGUCG GU  UGCCAGACAU      C
GGGAAAAGCACAGAAUUA   U^         UC     G  CU          AGAAGA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-15-P1c_5p

mirBase accessionMIMAT0021790
Sequence
0- UAGCAGCACAACAUGGUUUGUA -22
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Star sequence

Aca-Mir-15-P1c_3p*

mirBase accessionMIMAT0021791
Sequence
37- CAGACCGUUCUGGGCUGCCUCA -59
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