Mir-15-P1c-v3

MirGeneDB ID

Mmu-Mir-15-P1c-v3

Family name

MIR-15 (all species)

Seed

AACAUGA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-322

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Aca-Mir-15-P1c Ami-Mir-15-P1c Bta-Mir-15-P1c Cfa-Mir-15-P1c Cin-Mir-15-P1 Cja-Mir-15-P1c Cli-Mir-15-P1c Cmi-Mir-15-P1c Cpi-Mir-15-P1c Cpo-Mir-15-P1c Dno-Mir-15-P1c Eca-Mir-15-P1c Ete-Mir-15-P1c Gga-Mir-15-P1c Gja-Mir-15-P1c Hsa-Mir-15-P1c Laf-Mir-15-P1c Lch-Mir-15-P1c Loc-Mir-15-P1c Loc-Mir-15-P1c-as Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mml-Mir-15-P1c Mmr-Mir-15-P1c Mun-Mir-15-P1c Neu-Mir-15-P1c Oan-Mir-15-P1c Ocu-Mir-15-P1c Pab-Mir-15-P1c Pbv-Mir-15-P1c Rno-Mir-15-P1c3 Rno-Mir-15-P1c4 Sha-Mir-15-P1c Spt-Mir-15-P1c Tgu-Mir-15-P1c Xla-Mir-15-P1c1 Xla-Mir-15-P1c2 Xtr-Mir-15-P1c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chrX: 53054268-53054329 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1c-v3)

Mir-450-P3 chrX: 53048008-53048065 [-] UCSC Ensembl
Mir-450-P2 chrX: 53048171-53048227 [-] UCSC Ensembl
Mir-450-P1 chrX: 53048304-53048360 [-] UCSC Ensembl
Mir-542 chrX: 53049414-53049474 [-] UCSC Ensembl
Mir-351 chrX: 53053276-53053338 [-] UCSC Ensembl
Mir-15-P2c chrX: 53053987-53054049 [-] UCSC Ensembl
Mir-15-P1c-v3 chrX: 53054268-53054329 [-] UCSC Ensembl
Mir-15-P1c-v2 chrX: 53054269-53054328 [-] UCSC Ensembl
Mir-15-P1c-v1 chrX: 53054270-53054327 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGGCCCCCACCCUCGUUGACUCCGAAGGGCUGCAGCAGCAAUUCAUGUUUUGGAGUAUUGCCAAGGUUCAAAACAUGAAGCGCUGCAACACCCCUUCGUGGGGAAUGUAGAAGGUGGGGACC

Get precursor sequence

Structure

        10         20         30        40        50        60
CGGCCCCCACCCUCGUUGA-   -|      C  CA     AA           GAGUAUU 
                    CUC CGAAGGG UG  GCAGC  UUCAUGUUUUG       G
                    GGG GCUUCCC AC  CGUCG  AAGUACAAAAC       C
CCAGGGGUGGAAGAUGUAAG   U^      C  AA     CG           UUGGAAC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Star sequence

Mmu-Mir-15-P1c-v3_5p*

mirBase accession

MIMAT0000548

Sequence

0- UGCAGCAGCAAUUCAUGUUUUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000548
TargetScanVert: mmu-miR-322-5p
miRDB: MIMAT0000548

Mature sequence

Mmu-Mir-15-P1c-v3_3p

mirBase accession

MIMAT0000549

Sequence

40- AAACAUGAAGCGCUGCAACACC -62

Get sequence

Proposed targets

microrna.org: MIMAT0000549
TargetScanVert: mmu-miR-322-3p
miRDB: MIMAT0000549