MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-15-P1c3

Family name MIR-15 (all species)
Seed AGCAGCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-322-1
Paralogues Rno-Mir-15-P1a  Rno-Mir-15-P1b  Rno-Mir-15-P1c4  Rno-Mir-15-P1d  Rno-Mir-15-P2a  Rno-Mir-15-P2b  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Rno-Mir-15-P2d 
Orthologues Aca-Mir-15-P1c  Ami-Mir-15-P1c  Bta-Mir-15-P1c  Cfa-Mir-15-P1c  Cin-Mir-15-P1  Cja-Mir-15-P1c  Cli-Mir-15-P1c  Cmi-Mir-15-P1c  Cpi-Mir-15-P1c  Cpo-Mir-15-P1c  Dno-Mir-15-P1c  Eca-Mir-15-P1c  Ete-Mir-15-P1c  Gga-Mir-15-P1c  Gja-Mir-15-P1c  Hsa-Mir-15-P1c  Laf-Mir-15-P1c  Lch-Mir-15-P1c  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mml-Mir-15-P1c  Mmr-Mir-15-P1c  Mmu-Mir-15-P1c-v1  Mmu-Mir-15-P1c-v2  Mmu-Mir-15-P1c-v3  Mun-Mir-15-P1c  Neu-Mir-15-P1c  Oan-Mir-15-P1c  Ocu-Mir-15-P1c  Pab-Mir-15-P1c  Pbv-Mir-15-P1c  Sha-Mir-15-P1c  Spt-Mir-15-P1c  Tgu-Mir-15-P1c  Xtr-Mir-15-P1c 
Node of Origin (locus) R. norvegicus
Node of Origin (family) Olfactores
Genome context
(rn6)
chrX: 158584564-158584621 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1c3)
Mir-15-P1c3 chrX: 158584564-158584621 [+] UCSC Ensembl
Mir-15-P2c3 chrX: 158584862-158584924 [+] UCSC Ensembl
Mir-351-P1a chrX: 158585602-158585661 [+] UCSC Ensembl
Mir-542-P1a chrX: 158588539-158588599 [+] UCSC Ensembl
Mir-450-P1a chrX: 158589644-158589700 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCCCACCCUCGCUGACUCCGAAGGGAUGCAGCAGCAAUUCAUGUUUUGGAGUAUUGCCAAGGUUCAAAACAUGAAGCGCUGCAACACCCCUUCGUGGGAAAUAGAGAGGUGGGGUC
Get precursor sequence
Structure
        10         20         30        40        50        
GCCCCCACCCUCGCUGA-   -|      A  CA     AA             GUAUU 
                  CUC CGAAGGG UG  GCAGC  UUCAUGUUUUGGA     G
                  GGG GCUUCCC AC  CGUCG  AAGUACAAAACUU     C
CUGGGGUGGAGAGAUAAA   U^      C  AA     CG             GGAAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
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Mature sequence

Rno-Mir-15-P1c3_5p

mirBase accessionMIMAT0001619
Sequence
0- CAGCAGCAAUUCAUGUUUUGGA -22
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Star sequence

Rno-Mir-15-P1c3_3p*

mirBase accessionMIMAT0000547
Sequence
36- CAAAACAUGAAGCGCUGCAACA -58
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