MirGeneDB 3.0

MirGeneDB ID

Rno-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-195
Paralogues Rno-Mir-15-P1a  Rno-Mir-15-P1b  Rno-Mir-15-P1c3  Rno-Mir-15-P1c4  Rno-Mir-15-P1d  Rno-Mir-15-P2a  Rno-Mir-15-P2b  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(rn6)
chr10: 56845315-56845375 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2d)
Mir-15-P1d chr10: 56844978-56845039 [+] UCSC Ensembl
Mir-15-P2d chr10: 56845315-56845375 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGUUGCCCACACCCAACUCUCCUGGCUCUAGCAGCACAGAAAUAUUGGCACGGGUAAGUGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUACUGAAGGGGCU
Get precursor sequence
Structure
        10          20        30        40         50         
UUUGUUGCCCACACCCA--   CU    G  CU          A-|         CGGGUA 
                   ACU  CCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UGG  GGAC GA  UCGUCGUGUC  UUAUAACCGU      G
UCGGGGAAGUCAUCGAGAG   UG    G  CC          GG^         CUGAGU 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-15-P2d_5p

mirBase accessionMIMAT0000870
Sequence
0- UAGCAGCACAGAAAUAUUGGCA -22
Get sequence
Proposed targets microrna.org: MIMAT0000870
TargetScanVert: rno-miR-195-5p
miRDB: MIMAT0000870
Star sequence

Rno-Mir-15-P2d_3p*

mirBase accessionMIMAT0017149
Sequence
38- CCAAUAUUGGCUGUGCUGCUCCA -61
Get sequence
Proposed targets TargetScanVert: rno-miR-195-3p
miRDB: MIMAT0017149