MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1b  Gja-Mir-15-P1c  Gja-Mir-15-P2a  Gja-Mir-15-P2b  Gja-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Loc-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015177030.1: 45293-45357 [+]
Precursor
(pre-Mir +30nt flank)
CCUGGGGGGCAGGCAGCGCGGGCACCUGUCUAGCAGCACAUCAAUACUGGCACUGCCCCGCCCCGCUGGCCGCCAGUCUUCCUUGUGCUGCUCCAGGGGGGCUUGGCCUGAACAGCGGGAGUCCA
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Structure
        10          20         30        40         50        60 
CCUGGGGGGCAGGCAGCG--     A-|  GUCU         UC-  U      ACUGCCCCG 
                    CGGGC  CCU    AGCAGCACA   AA ACUGGC         C
                    GUUCG  GGG    UCGUCGUGU   UU UGACCG         C
ACCUGAGGGCGACAAGUCCG     GG^  ACC-         UCC  C      CCGGUCGCC 
   120       110       100         90        80        70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-15-P2d_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAAUACUGGCA -22
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Star sequence

Gja-Mir-15-P2d_3p* (predicted)
mirBase accessionNone
Sequence 
42- CCAGUCUUCCUUGUGCUGCUCCA -65
Get sequence