MirGeneDB 2.1

MirGeneDB ID

Gja-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-15-P1a  Gja-Mir-15-P1c  Gja-Mir-15-P2a  Gja-Mir-15-P2b  Gja-Mir-15-P2c  Gja-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)
NW_015163604.1: 1350423-1350482 [+]
Precursor
(pre-Mir +30nt flank)
AACCUUGUGCUUGGAAGCCUUAAGGUACCCUAGCAGCACAUCAUGAAUUGUAUGUCAUAGUAAAUAUGCAAGUCAUUAUUUGCUGCUUUAGAAUUUUAAGGAAGAUAAUCACUUGCAGUU
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Structure
        10          20        30        40        50         
AACCUUGUGCUUGGAAG--|        ACCCU       C  C    A     UGUCAU 
                   CCUUAAGGU     AGCAGCA AU AUGA UUGUA      A
                   GGAAUUUUA     UCGUCGU UA UACU AACGU      G
UUGACGUUCACUAAUAGAA^        AGAUU       U  U    G     AUAAAU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
To
Mature sequence

Gja-Mir-15-P1b_5p

mirBase accessionNone
Sequence
0- UAGCAGCACAUCAUGAAUUGUA -22
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Star sequence

Gja-Mir-15-P1b_3p*

mirBase accessionNone
Sequence
38- CAAGUCAUUAUUUGCUGCUUUA -60
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