Mir-15-P1b

MirGeneDB ID

Mmu-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-15b

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c Mmu-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chr3: 69009775-69009834 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b chr3: 69009775-69009834 [+] UCSC Ensembl
Mir-15-P2b chr3: 69009918-69009982 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGUCCUGUCUUUUGGAACCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUACUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAGAUUAUA

Get precursor sequence

Structure

        10          20        30        40        50         
AGUCCUGUCUUUUGGAA--|      GUA   U       C  C      UA  UACUAC 
                   CCUUAAA   CUG AGCAGCA AU AUGGUU  CA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAA  GU      G
AUAUUAGAACUUACUUAAA^      AAA   C       U  U      GC  AGAACU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-15-P1b_5p

mirBase accession

MIMAT0000124

Sequence

0- UAGCAGCACAUCAUGGUUUACA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000124
TargetScanVert: mmu-miR-15b-5p
miRDB: MIMAT0000124

Star sequence

Mmu-Mir-15-P1b_3p*

mirBase accession

MIMAT0004521

Sequence

38- CGAAUCAUUAUUUGCUGCUCUA -60

Get sequence

Proposed targets

microrna.org: MIMAT0004521
TargetScanVert: mmu-miR-15b-3p
miRDB: MIMAT0004521