Mir-15-P1b

MirGeneDB ID

Tni-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-15b

Paralogues

Tni-Mir-15-P1a2 Tni-Mir-15-P2a2 Tni-Mir-15-P2b

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

16: 2089823-2089885 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUGGGUAGAGGAUGGCCCUUAGACUGCUUUAGCAGCGCAUCAUGGUUUGUAAUGAUGUGGAAAAAAGGUGCAAACCAUAAUUUGCUGCUUUAGAAUUUUAAGGAAAAAGGCGUUCCACCUGA

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Structure

        10          20        30        40        50        60 
GCUGGGUAGAGGAUGGC--|      CUG  UU       C  C          AUGAUGUG 
                   CCUUAGA   CU  AGCAGCG AU AUGGUUUGUA        \
                   GGAAUUU   GA  UCGUCGU UA UACCAAACGU        G
AGUCCACCUUGCGGAAAAA^      UAA  UU       U  A          GGAAAAAA 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-15-P1b_5p

mirBase accession

MIMAT0003086

Sequence

0- UAGCAGCGCAUCAUGGUUUGUA -22

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Star sequence

Tni-Mir-15-P1b_3p*

mirBase accession

None

Sequence

41- CAAACCAUAAUUUGCUGCUUUA -63

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