Mir-15-P1b

MirGeneDB ID

Cpo-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-15b

Paralogues

Cpo-Mir-15-P1a Cpo-Mir-15-P1c Cpo-Mir-15-P1d Cpo-Mir-15-P2a Cpo-Mir-15-P2b Cpo-Mir-15-P2c Cpo-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_8: 57379064-57379123 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-15-P1b)

Mir-15-P1b scaffold_8: 57379064-57379123 [+] UCSC
Mir-15-P2b scaffold_8: 57379204-57379268 [+] UCSC

Precursor
(pre-Mir +30nt flank)

AUCCUGUAUAUUUGAGGCCUUAAAGUACUCUAGCAGCACAUCAUGAUUUACAUACGUUAGUCAAGAUGCGAAUCAUUAUAUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAACGUAUA

Get precursor sequence

Structure

        10          20        30        40        50         
AUCCUGUAUAUUUGAGG--|      GUA  CU       C  C      UA  UACGUU 
                   CCUUAAA   CU  AGCAGCA AU AUGAUU  CA      A
                   GGAAUUU   GA  UCGUCGU UA UACUAA  GU      G
AUAUGCAAACUUACUUAAA^      AAA  UC       A  U      GC  AGAACU 
.       110       100        90        80        70        60