MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-15b
Paralogues Cpo-Mir-15-P1a  Cpo-Mir-15-P1c  Cpo-Mir-15-P1d  Cpo-Mir-15-P2a  Cpo-Mir-15-P2b  Cpo-Mir-15-P2c  Cpo-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(cavPor3)
scaffold_8: 57379064-57379123 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1b)
Mir-15-P1b scaffold_8: 57379064-57379123 [+] UCSC
Mir-15-P2b scaffold_8: 57379204-57379268 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUCCUGUAUAUUUGAGGCCUUAAAGUACUCUAGCAGCACAUCAUGAUUUACAUACGUUAGUCAAGAUGCGAAUCAUUAUAUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAACGUAUA
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Structure
        10          20        30        40        50         
AUCCUGUAUAUUUGAGG--|      GUA  CU       C  C      UA  UACGUU 
                   CCUUAAA   CU  AGCAGCA AU AUGAUU  CA      A
                   GGAAUUU   GA  UCGUCGU UA UACUAA  GU      G
AUAUGCAAACUUACUUAAA^      AAA  UC       A  U      GC  AGAACU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Cpo-Mir-15-P1b_5p

mirBase accessionMIMAT0046851
Sequence
0- UAGCAGCACAUCAUGAUUUACA -22
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Star sequence

Cpo-Mir-15-P1b_3p*

mirBase accessionMIMAT0046852
Sequence
38- CGAAUCAUUAUAUGCUGCUCUA -60
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