MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCG
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-15b
Paralogues Gmo-Mir-15-P1a2  Gmo-Mir-15-P2a2  Gmo-Mir-15-P2b 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_1904: 97574-97634 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1b)		 Mir-15-P2b GeneScaffold_1904: 97391-97455 [-] UCSC Ensembl
Mir-15-P1b GeneScaffold_1904: 97574-97634 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGCACACUCCUCUUGUCCUUGGACUGCUAUAGCAGCGCAUCAUGGUUUGAAACGAUGUCAAAAGUGUCCAAACCAUUAUGUGCUGCUGUAGAAUUUUAAGGAAAUGAUUGCGAUUUUACC
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Structure
        10          20        30        40        50          
GGGCACACUCCUCUUGU--|      CUG              C        AAACGAUGU 
                   CCUUGGA   CUAUAGCAGCGCAU AUGGUUUG         \
                   GGAAUUU   GAUGUCGUCGUGUA UACCAAAC         C
CCAUUUUAGCGUUAGUAAA^      UAA              U        CUGUGAAAA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-15-P1b_5p
mirBase accessionMIMAT0044158
Sequence 
0- UAGCAGCGCAUCAUGGUUUGAA -22
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Star sequence

Gmo-Mir-15-P1b_3p*
mirBase accessionNone
Sequence 
39- CAAACCAUUAUGUGCUGCUGUA -61
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