| MirGeneDB ID | Lch-Mir-15-P1b |
|---|---|
| Family name | MIR-15 (all species) |
| Seed | AGCAGCA |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-15-P1a Lch-Mir-15-P1c Lch-Mir-15-P2a Lch-Mir-15-P2b Lch-Mir-15-P2c |
| Orthologues | Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Sha-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (LatCha1_add) |
JH127319.1: 508178-508236 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGUUGUACUUCUGGUGGCCUUAAAGUGCUGUAGCAGCACAUCAUGGUUUGCAACACUAGUUAAGAUGCAAAUCAUUAUUUGCUGCUUUAGAAUUUUAGGGGAAAAGAUUCUUGGACAGUGet precursor sequence |
| Structure | 10 20 30 40 50 UGUUGUACUUCUGGUGG--| G U C C ACACUA CCUUAAAGU CUG AGCAGCA AU AUGGUUUGCA \ GGGAUUUUA GAU UCGUCGU UA UACUAAACGU G UGACAGGUUCUUAGAAAAG^ A U U U AGAAUU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | No |
| Mature sequence | Lch-Mir-15-P1b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAGCAGCACAUCAUGGUUUGCA -22
Get sequence
|
| Star sequence | Lch-Mir-15-P1b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- CAAAUCAUUAUUUGCUGCUUUA -59
Get sequence
|
