Mir-15-P1b

MirGeneDB ID

Sha-Mir-15-P1b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-15-P1a Sha-Mir-15-P1c Sha-Mir-15-P1d Sha-Mir-15-P2a Sha-Mir-15-P2b Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Sha-Mir-15-P2d

Orthologues

Aca-Mir-15-P1b Ami-Mir-15-P1b Bta-Mir-15-P1b Cfa-Mir-15-P1b Cin-Mir-15-P1 Cja-Mir-15-P1b Cli-Mir-15-P1b Cmi-Mir-15-P1b Cpi-Mir-15-P1b Cpo-Mir-15-P1b Dno-Mir-15-P1b Dre-Mir-15-P1b Eca-Mir-15-P1b Ete-Mir-15-P1b Gga-Mir-15-P1b Gja-Mir-15-P1b Gmo-Mir-15-P1b Hsa-Mir-15-P1b Laf-Mir-15-P1b Lch-Mir-15-P1b Loc-Mir-15-P1b Mal-Mir-15-P1b Mml-Mir-15-P1b Mmr-Mir-15-P1b Mmu-Mir-15-P1b Mun-Mir-15-P1b Oan-Mir-15-P1b Ocu-Mir-15-P1b Pab-Mir-15-P1b Pbv-Mir-15-P1b Rno-Mir-15-P1b Spt-Mir-15-P1b Sto-Mir-15-P1b Tgu-Mir-15-P1b Tni-Mir-15-P1b Xla-Mir-15-P1b1 Xla-Mir-15-P1b2 Xtr-Mir-15-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(DEVIL_add)

GL849915.1: 2594763-2594822 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGAAGAAGCUGGGGAGACCCGAAAGUCCUCUAGCAGCACAUCAUGGUUUACAUGUUCUUGCCCAGAUGCGAAUCAUUAUUUGCUGCUUUAGGAAUUUAAGGGGAGAGUCAUGGAAGAGGU

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Structure

        10         20         30        40        50         
GGAAGAAGCUGGGGAGA-   GAAAG-|   CU       C  C      UA  UGUUCU 
                  CCC      UCCU  AGCAGCA AU AUGGUU  CA      U
                  GGG      AGGA  UCGUCGU UA UACUAA  GU      G
UGGAGAAGGUACUGAGAG   AAUUUA^   UU       U  U      GC  AGACCC 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-15-P1b_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAUGGUUUACA -22

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Star sequence

Sha-Mir-15-P1b_3p*

mirBase accession

None

Sequence

38- CGAAUCAUUAUUUGCUGCUUUA -60

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