MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-15b
Paralogues Oan-Mir-15-P1a  Oan-Mir-15-P1c  Oan-Mir-15-P1d  Oan-Mir-15-P2a  Oan-Mir-15-P2b  Oan-Mir-15-P2c  Oan-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Ocu-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041728.1: 155378996-155379055 [+]
Clustered miRNAs
(< 50kb from Mir-15-P1b)
Mir-15-P1b NC_041728.1: 155378996-155379055 [+]
Mir-15-P2b NC_041728.1: 155379151-155379211 [+]
Precursor
(pre-Mir +30nt flank)
AAUCCUGCAUGUGGAGGCCUUGGACUGCUAUAGCAGCACAUCAUGGUUUGCAUGGUAUAGCCAAGAUGCGAAUCAUUAUUUGCUGCUUUAGAAAUUUAAGGAAAAGAAACCUUUCAAGAC
Get precursor sequence
Structure
        10          20        30        40        50         
AAUCCUGCAUGUGGAGG--|      CUG   U       C  C          UGGUAU 
                   CCUUGGA   CUA AGCAGCA AU AUGGUUUGCA      A
                   GGAAUUU   GAU UCGUCGU UA UACUAAGCGU      G
CAGAACUUUCCAAAGAAAA^      AAA   U       U  U          AGAACC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-15-P1b_5p

mirBase accessionMIMAT0007050
Sequence
0- UAGCAGCACAUCAUGGUUUGCA -22
Get sequence
Star sequence

Oan-Mir-15-P1b_3p*

mirBase accessionMIMAT0007051
Sequence
38- CGAAUCAUUAUUUGCUGCUUUA -60
Get sequence