MirGeneDB 3.0
MirGeneDB ID

Spt-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Tuatara (Sphenodon punctatus)
MiRBase ID
Paralogues Spt-Mir-15-P1a  Spt-Mir-15-P1c  Spt-Mir-15-P2a  Spt-Mir-15-P2b  Spt-Mir-15-P2c 
Orthologues Aca-Mir-15-P1b  Ami-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003113815.1_ASM311381v1_TUATARA)		 QEPC01014905.1: 2949395-2949454 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGACUUGAAUUUGAGGCCUUAAAGUACUCUAGCAGCACAUCAUGAUUUGUAUGUGAUAGCAAAGAUGCAAAUCAUUAUUUGCUGCUUAAGAAAUUUAAGGAAGAGAAACGGCUGAAGAU
Get precursor sequence
Structure
        10          20        30        40        50         
GAGACUUGAAUUUGAGG--|      GUA  CU       C  C          UGUGAU 
                   CCUUAAA   CU  AGCAGCA AU AUGAUUUGUA      A
                   GGAAUUU   GA  UCGUCGU UA UACUAAACGU      G
UAGAAGUCGGCAAAGAGAA^      AAA  AU       U  U          AGAAAC 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Mature sequence

Spt-Mir-15-P1b_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAUGAUUUGUA -22
Get sequence
Star sequence

Spt-Mir-15-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAAAUCAUUAUUUGCUGCUUAA -60
Get sequence