MirGeneDB 3.0

MirGeneDB ID

Ami-Mir-15-P1b

Family name MIR-15 (all species)
Seed AGCAGCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-15b
Paralogues Ami-Mir-15-P1a  Ami-Mir-15-P1c  Ami-Mir-15-P1d  Ami-Mir-15-P2a  Ami-Mir-15-P2b  Ami-Mir-15-P2c  Ami-Mir-15-P2d 
Orthologues Aca-Mir-15-P1b  Bta-Mir-15-P1b  Cfa-Mir-15-P1b  Cin-Mir-15-P1  Cja-Mir-15-P1b  Cli-Mir-15-P1b  Cmi-Mir-15-P1b  Cpi-Mir-15-P1b  Cpo-Mir-15-P1b  Dno-Mir-15-P1b  Dre-Mir-15-P1b  Eca-Mir-15-P1b  Ete-Mir-15-P1b  Gga-Mir-15-P1b  Gja-Mir-15-P1b  Gmo-Mir-15-P1b  Hsa-Mir-15-P1b  Laf-Mir-15-P1b  Lch-Mir-15-P1b  Loc-Mir-15-P1b  Mal-Mir-15-P1b  Mml-Mir-15-P1b  Mmr-Mir-15-P1b  Mmu-Mir-15-P1b  Mun-Mir-15-P1b  Oan-Mir-15-P1b  Ocu-Mir-15-P1b  Pab-Mir-15-P1b  Pbv-Mir-15-P1b  Rno-Mir-15-P1b  Sha-Mir-15-P1b  Spt-Mir-15-P1b  Sto-Mir-15-P1b  Tgu-Mir-15-P1b  Tni-Mir-15-P1b  Xla-Mir-15-P1b1  Xla-Mir-15-P1b2  Xtr-Mir-15-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017711041.1: 20725562-20725621 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-15-P1b)
Mir-15-P1b NW_017711041.1: 20725562-20725621 [+] UCSC
Mir-15-P2b NW_017711041.1: 20725729-20725791 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAGUCUUUCAUUUGAGACCUUAAAUUACUCUAGCAGCACAUCAUGGUUUGCAUGAUCUUGUAAAGAUGCUAAUCAUUAUUUGCUGCUUUAGGAAUUUAAGGAAAAAACACAGUUGAAGAU
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Structure
        10          20        30        40        50         
GAGUCUUUCAUUUGAGA--|        A  CU       C  C      U   UGAUCU 
                   CCUUAAAUU CU  AGCAGCA AU AUGGUU GCA      U
                   GGAAUUUAA GA  UCGUCGU UA UACUAA CGU      G
UAGAAGUUGACACAAAAAA^        G  UU       U  U      U   AGAAAU 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Ami-Mir-15-P1b_5p

mirBase accessionMIMAT0038038
Sequence
0- UAGCAGCACAUCAUGGUUUGCA -22
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Star sequence

Ami-Mir-15-P1b_3p*

mirBase accessionMIMAT0038039
Sequence
38- CUAAUCAUUAUUUGCUGCUUUA -60
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