MirGeneDB ID | Cja-Mir-15-P1b |
Family name |
MIR-15 (all species) |
Seed |
AGCAGCA |
Species |
White-tufted-ear marmoset (Callithrix jacchus) |
MiRBase ID |
|
Paralogues |
Cja-Mir-15-P1a
Cja-Mir-15-P1c
Cja-Mir-15-P1d
Cja-Mir-15-P2a
Cja-Mir-15-P2b
Cja-Mir-15-P2c
Cja-Mir-15-P2d
|
Orthologues |
Aca-Mir-15-P1b
Ami-Mir-15-P1b
Bta-Mir-15-P1b
Cfa-Mir-15-P1b
Cin-Mir-15-P1
Cli-Mir-15-P1b
Cmi-Mir-15-P1b
Cpi-Mir-15-P1b
Cpo-Mir-15-P1b
Dno-Mir-15-P1b
Dre-Mir-15-P1b
Eca-Mir-15-P1b
Ete-Mir-15-P1b
Gga-Mir-15-P1b
Gja-Mir-15-P1b
Gmo-Mir-15-P1b
Hsa-Mir-15-P1b
Laf-Mir-15-P1b
Lch-Mir-15-P1b
Loc-Mir-15-P1b
Mal-Mir-15-P1b
Mml-Mir-15-P1b
Mmr-Mir-15-P1b
Mmu-Mir-15-P1b
Mun-Mir-15-P1b
Oan-Mir-15-P1b
Ocu-Mir-15-P1b
Pab-Mir-15-P1b
Pbv-Mir-15-P1b
Rno-Mir-15-P1b
Sha-Mir-15-P1b
Spt-Mir-15-P1b
Sto-Mir-15-P1b
Tgu-Mir-15-P1b
Tni-Mir-15-P1b
Xla-Mir-15-P1b1
Xla-Mir-15-P1b2
Xtr-Mir-15-P1b
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Olfactores
|
Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021931.1: 17950834-17950893 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCCUGUGUUUUUGAGGCCUUAAAGUACUGUAGCAGCACAUCAUGGUUUACAUACUACAGUCAAGAUGCGAAUCAUUAUUUGCUGCUCUAGAAAUUUAAGGAAAUUCAUUCAAAACUAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCCUGUGUUUUUGAGG--| GUA U C C UA UACUAC
CCUUAAA CUG AGCAGCA AU AUGGUU CA A
GGAAUUU GAU UCGUCGU UA UACUAA GU G
GUAUCAAAACUUACUUAAA^ AAA C U U GC AGAACU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cja-Mir-15-P1b_5p |
mirBase accession | None |
Sequence |
0- UAGCAGCACAUCAUGGUUUACA -22
Get sequence
|
Star sequence |
Cja-Mir-15-P1b_3p* |
mirBase accession | None |
Sequence |
38- CGAAUCAUUAUUUGCUGCUCUA -60
Get sequence
|