| MirGeneDB ID | Cja-Mir-15-P1d |
|---|---|
| Family name | MIR-15 (all species) |
| Seed | AGCAGCA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | Cja-Mir-15-P1a Cja-Mir-15-P1b Cja-Mir-15-P1c Cja-Mir-15-P2a Cja-Mir-15-P2b Cja-Mir-15-P2c Cja-Mir-15-P2d |
| Orthologues | Ami-Mir-15-P1d Bta-Mir-15-P1d Cfa-Mir-15-P1d Cin-Mir-15-P1 Cpo-Mir-15-P1d Dno-Mir-15-P1d Dre-Mir-15-P1d Eca-Mir-15-P1d Ete-Mir-15-P1d Hsa-Mir-15-P1d Laf-Mir-15-P1d Loc-Mir-15-P1d Mdo-Mir-15-P1d Mml-Mir-15-P1d Mmr-Mir-15-P1d Mmu-Mir-15-P1d Neu-Mir-15-P1d Oan-Mir-15-P1d Ocu-Mir-15-P1d Pab-Mir-15-P1d Rno-Mir-15-P1d Sha-Mir-15-P1d Sto-Mir-15-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Olfactores |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021919.1: 69655841-69655902 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CUCUCAACCCACCCGGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCCGAGGUUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUCUCAACCCACCCGGU--| UG C CCC G C UACGGCACU CC CUC CGC AGCA CACA UGUGGUUUG G GG GGG GCG UUGU GUGU ACACCAAAC U UUUGGAGCCGCCACGGAGG^ GU A AGA G C CUGCACCGG 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Cja-Mir-15-P1d_5p |
| mirBase accession | None |
| Sequence |
0- CAGCAGCACACUGUGGUUUGUA -22
Get sequence
|
| Star sequence | Cja-Mir-15-P1d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- CAAACCACACUGUGGUGUUAGA -62
Get sequence
|
