MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-15-P1d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Cow (Bos taurus)
MiRBase ID bta-mir-497
Paralogues Bta-Mir-15-P1a  Bta-Mir-15-P1b  Bta-Mir-15-P1c  Bta-Mir-15-P2a  Bta-Mir-15-P2b  Bta-Mir-15-P2c  Bta-Mir-15-P2d 
Orthologues Ami-Mir-15-P1d  Cfa-Mir-15-P1d  Cin-Mir-15-P1  Cja-Mir-15-P1d  Cpo-Mir-15-P1d  Dno-Mir-15-P1d  Dre-Mir-15-P1d  Eca-Mir-15-P1d  Ete-Mir-15-P1d  Hsa-Mir-15-P1d  Laf-Mir-15-P1d  Loc-Mir-15-P1d  Mdo-Mir-15-P1d  Mml-Mir-15-P1d  Mmr-Mir-15-P1d  Mmu-Mir-15-P1d  Neu-Mir-15-P1d  Oan-Mir-15-P1d  Ocu-Mir-15-P1d  Pab-Mir-15-P1d  Rno-Mir-15-P1d  Sha-Mir-15-P1d  Sto-Mir-15-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037346.1: 26807843-26807904 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P1d)		 Mir-15-P2d NC_037346.1: 26807519-26807579 [-] UCSC Ensembl
Mir-15-P1d NC_037346.1: 26807843-26807904 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCAACCCACCCCAGUCCUGCUCCCGCCCCAGCAGCACACUGUGGUUUGUACGGCACUGUGGCCACGUCCAAACCACACUGUGGUGUUAGAGCGAGGGUGGGGGAGGCACCGCUGAGGCUU
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Structure
        10          20        30        40        50        60
UCUCAACCCACCCCAGU--| UG   C   CCC    G    C         UACGGCACU 
                   CC  CUC CGC   AGCA CACA UGUGGUUUG         G
                   GG  GGG GCG   UUGU GUGU ACACCAAAC         U
UUCGGAGUCGCCACGGAGG^ GU   A   AGA    G    C         CUGCACCGG 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-15-P1d_5p
mirBase accessionMIMAT0004343
Sequence 
0- CAGCAGCACACUGUGGUUUGUA -22
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Proposed targets TargetScanVert: bta-miR-497
Star sequence

Bta-Mir-15-P1d_3p*
mirBase accessionNone
Sequence 
40- CAAACCACACUGUGGUGUUAGA -62
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