Mir-15-P2b

MirGeneDB ID

Bta-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-16b

Paralogues

Bta-Mir-15-P1a Bta-Mir-15-P1b Bta-Mir-15-P1c Bta-Mir-15-P1d Bta-Mir-15-P2a Bta-Mir-15-P2c Bta-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Loc-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037328.1: 107073634-107073698 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2b)

Mir-15-P2b NC_037328.1: 107073634-107073698 [-] UCSC Ensembl
Mir-15-P1b NC_037328.1: 107073784-107073843 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGGAUGGACUGACAUACUUGUUCCGCUGUAGCAGCACGUAAAUAUUGGCGUAGUAAAAUAAAUAUUAAACACCAAUAUUAUUGUGCUGCUUUAGCGUGACAGGGACAUAGCAACUAUUUAUCA

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Structure

        10          20        30        40        50        60  
UUUGGAUGGACUGACAUA--|    UC     U         UA        C  AGUAAAAU 
                    CUUGU  CGCUG AGCAGCACG  AAUAUUGG GU        \
                    GGACA  GCGAU UCGUCGUGU  UUAUAACC CA        A
ACUAUUUAUCAACGAUACAG^    GU     U         UA        A  AAUUAUAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Bo	Br	Ce	Co	Co	De	Fe	He	Hy	Ir	Ki	La	Lo	Mi	No	Op	Or	Pe	Re	Su	Te

Mature sequence

Bta-Mir-15-P2b_5p

mirBase accession

MIMAT0003525

Sequence

0- UAGCAGCACGUAAAUAUUGGCGU -23

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Proposed targets

TargetScanVert: bta-miR-16b

Star sequence

Bta-Mir-15-P2b_3p*

mirBase accession

None

Sequence

42- ACCAAUAUUAUUGUGCUGCUUUA -65

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