MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-15-P2b

Family name MIR-15 (all species)
Seed AGCAGCA
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-15-P1a  Lch-Mir-15-P1b  Lch-Mir-15-P1c  Lch-Mir-15-P2a  Lch-Mir-15-P2c 
Orthologues Aca-Mir-15-P2b  Ami-Mir-15-P2b  Bta-Mir-15-P2b  Cfa-Mir-15-P2b  Cin-Mir-15-P2  Cja-Mir-15-P2b  Cli-Mir-15-P2b  Cmi-Mir-15-P2b  Cpi-Mir-15-P2b  Cpo-Mir-15-P2b  Dno-Mir-15-P2b  Dre-Mir-15-P2b  Eca-Mir-15-P2b  Ete-Mir-15-P2b  Gga-Mir-15-P2b  Gja-Mir-15-P2b  Gmo-Mir-15-P2b  Hsa-Mir-15-P2b  Laf-Mir-15-P2b  Loc-Mir-15-P2b  Mal-Mir-15-P2b  Mdo-Mir-15-P2b  Mml-Mir-15-P2b  Mmr-Mir-15-P2b  Mmu-Mir-15-P2b  Mun-Mir-15-P2b  Neu-Mir-15-P2b  Oan-Mir-15-P2b  Ocu-Mir-15-P2b  Pab-Mir-15-P2b  Pbv-Mir-15-P2b  Rno-Mir-15-P2b  Sha-Mir-15-P2b  Spt-Mir-15-P2b  Sto-Mir-15-P2b  Tgu-Mir-15-P2b  Tni-Mir-15-P2b  Xla-Mir-15-P2b1  Xla-Mir-15-P2b2  Xtr-Mir-15-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LatCha1_add)		 JH127319.1: 508022-508085 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGCAGGAUUACUUAUGCCAGCUCCACUCUAGCAGCAUGUAAAUAUUGGUGUAUAAAGAUAGACUAAAACCCCAAUGUUGUUGUGCUGCUUCAGUGUGGCAGGGUUUGGACAACUAAUCGGUA
Get precursor sequence
Structure
        10         20         30        40        50        60 
AUUGCAGGAUUACUUAU-   A-| UC    CU        GUA        U  AUAAAGA 
                  GCC  GC  CACU  AGCAGCAU   AAUAUUGG GU       U
                  UGG  CG  GUGA  UCGUCGUG   UUGUAACC CA       A
AUGGCUAAUCAACAGGUU   GA^ GU    CU        UUG        C  AAAUCAG 
  120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Lch-Mir-15-P2b_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGCAGCAUGUAAAUAUUGGUGU -23
Get sequence
Star sequence

Lch-Mir-15-P2b_3p* (predicted)
mirBase accessionNone
Sequence 
41- CCCAAUGUUGUUGUGCUGCUUCA -64
Get sequence