Mir-15-P2b

MirGeneDB ID

Loc-Mir-15-P2b

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2a Loc-Mir-15-P2c Loc-Mir-15-P2d

Orthologues

Aca-Mir-15-P2b Ami-Mir-15-P2b Bta-Mir-15-P2b Cfa-Mir-15-P2b Cin-Mir-15-P2 Cja-Mir-15-P2b Cli-Mir-15-P2b Cmi-Mir-15-P2b Cpi-Mir-15-P2b Cpo-Mir-15-P2b Dno-Mir-15-P2b Dre-Mir-15-P2b Eca-Mir-15-P2b Ete-Mir-15-P2b Gga-Mir-15-P2b Gja-Mir-15-P2b Gmo-Mir-15-P2b Hsa-Mir-15-P2b Laf-Mir-15-P2b Lch-Mir-15-P2b Mal-Mir-15-P2b Mdo-Mir-15-P2b Mml-Mir-15-P2b Mmr-Mir-15-P2b Mmu-Mir-15-P2b Mun-Mir-15-P2b Neu-Mir-15-P2b Oan-Mir-15-P2b Ocu-Mir-15-P2b Pab-Mir-15-P2b Pbv-Mir-15-P2b Rno-Mir-15-P2b Sha-Mir-15-P2b Spt-Mir-15-P2b Sto-Mir-15-P2b Tgu-Mir-15-P2b Tni-Mir-15-P2b Xla-Mir-15-P2b1 Xla-Mir-15-P2b2 Xtr-Mir-15-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG14: 5761675-5761741 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUUAAAAAUUAAUAUACCUUCUCCGCUUUAGCAGCACGUAAUUAUUGGUGUGUGAGAAAUAAGACCCAAACCCCAAUAUUACUUGUGCUGCUUCAGUGUGGCAGGAUUAAGCUUCUUUUGUGAUA

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Structure

        10          20        30          40        50        60  
UAGUUAAAAAUUAAUAUA--   U UC    UU        --|    U     U  GUGAGAAA 
                    CCU C  CGCU  AGCAGCAC  GUAAU AUUGG GU        U
                    GGA G  GUGA  UCGUCGUG  CAUUA UAACC CA        A
AUAGUGUUUUCUUCGAAUUA   C GU    CU        UU^    -     C  AACCCAGA 
     120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P2b_5p

mirBase accession

None

Sequence

0- UAGCAGCACGUAAUUAUUGGUGU -23

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Star sequence

Loc-Mir-15-P2b_3p*

mirBase accession

None

Sequence

43- CCCAAUAUUACUUGUGCUGCUUCA -67

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