Mir-15-P2d

MirGeneDB ID

Loc-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-15-P1a Loc-Mir-15-P1b Loc-Mir-15-P1c Loc-Mir-15-P1c-as Loc-Mir-15-P1d Loc-Mir-15-P2a Loc-Mir-15-P2b Loc-Mir-15-P2c

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(LepOcu1)

LG2: 61581861-61581925 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

ACGUGUCGUCCAGCUCUGUCUGCCUGGCUGUAGCAGCACAUCAAUAUUGGUAGCUGCCCUCAAACUGGGCUGCCAGUAUAGCUUGUGCUGCUCCAGUGUGGCUGACACUGUCAACACACAGCUUA

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Structure

        10          20        30        40         50        60 
ACGUGUCGUCCAGCUCU--   U   UG    U         UCA-|        GCUGCCCU 
                   GUC GCC  GCUG AGCAGCACA    AUAUUGGUA        C
                   CAG CGG  UGAC UCGUCGUGU    UAUGACCGU        A
AUUCGACACACAACUGUCA   U   UG    C         UCGA^        CGGGUCAA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Mature sequence

Loc-Mir-15-P2d_5p

mirBase accession

None

Sequence

0- UAGCAGCACAUCAAUAUUGGUA -22

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Star sequence

Loc-Mir-15-P2d_3p*

mirBase accession

None

Sequence

42- CCAGUAUAGCUUGUGCUGCUCCA -65

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