MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-15-P2d

Family name MIR-15 (all species)
Seed AGCAGCA
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-15-P1a  Loc-Mir-15-P1b  Loc-Mir-15-P1c  Loc-Mir-15-P1c-as  Loc-Mir-15-P1d  Loc-Mir-15-P2a  Loc-Mir-15-P2b  Loc-Mir-15-P2c 
Orthologues Aca-Mir-15-P2d  Ami-Mir-15-P2d  Bta-Mir-15-P2d  Cfa-Mir-15-P2d  Cin-Mir-15-P2  Cja-Mir-15-P2d  Cpo-Mir-15-P2d  Dno-Mir-15-P2d  Dre-Mir-15-P2d  Eca-Mir-15-P2d  Ete-Mir-15-P2d  Gja-Mir-15-P2d  Hsa-Mir-15-P2d  Laf-Mir-15-P2d  Mal-Mir-15-P2d  Mdo-Mir-15-P2d  Mml-Mir-15-P2d  Mmr-Mir-15-P2d  Mmu-Mir-15-P2d  Neu-Mir-15-P2d  Oan-Mir-15-P2d  Ocu-Mir-15-P2d  Pab-Mir-15-P2d  Rno-Mir-15-P2d  Sha-Mir-15-P2d  Sto-Mir-15-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG2: 61581861-61581925 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACGUGUCGUCCAGCUCUGUCUGCCUGGCUGUAGCAGCACAUCAAUAUUGGUAGCUGCCCUCAAACUGGGCUGCCAGUAUAGCUUGUGCUGCUCCAGUGUGGCUGACACUGUCAACACACAGCUUA
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Structure
        10          20        30        40         50        60 
ACGUGUCGUCCAGCUCU--   U   UG    U         UCA-|        GCUGCCCU 
                   GUC GCC  GCUG AGCAGCACA    AUAUUGGUA        C
                   CAG CGG  UGAC UCGUCGUGU    UAUGACCGU        A
AUUCGACACACAACUGUCA   U   UG    C         UCGA^        CGGGUCAA 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-15-P2d_5p
mirBase accessionNone
Sequence 
0- UAGCAGCACAUCAAUAUUGGUA -22
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Star sequence

Loc-Mir-15-P2d_3p*
mirBase accessionNone
Sequence 
42- CCAGUAUAGCUUGUGCUGCUCCA -65
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