Mir-15-P2d

MirGeneDB ID

Mmu-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-195a

Paralogues

Mmu-Mir-15-P1a Mmu-Mir-15-P1b Mmu-Mir-15-P1c-v1 Mmu-Mir-15-P1c-v2 Mmu-Mir-15-P1c-v3 Mmu-Mir-15-P1d Mmu-Mir-15-P2a Mmu-Mir-15-P2b Mmu-Mir-15-P2c

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Hsa-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(mm10)

chr11: 70235062-70235122 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P1d chr11: 70234730-70234791 [+] UCSC Ensembl
Mir-15-P2d chr11: 70235062-70235122 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUUGCCCACACCCAACUCUCCUGGCUCUAGCAGCACAGAAAUAUUGGCAUGGGGAAGUGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAGAGCUACUGAGAAGGGG

Get precursor sequence

Structure

        10          20        30        40         50         
UUUGUUGCCCACACCCA--   CU    G  CU          A-|         UGGGGA 
                   ACU  CCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UGG  GGAC GA  UCGUCGUGUC  UUAUAACCGU      G
GGGGAAGAGUCAUCGAGAG   UG    G  CC          GG^         CUGAGU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

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Mature sequence

Mmu-Mir-15-P2d_5p

mirBase accession

MIMAT0000225

Sequence

0- UAGCAGCACAGAAAUAUUGGCA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000225
TargetScanVert: mmu-miR-195a-5p
miRDB: MIMAT0000225

Star sequence

Mmu-Mir-15-P2d_3p*

mirBase accession

MIMAT0017000

Sequence

38- CCAAUAUUGGCUGUGCUGCUCCA -61

Get sequence

Proposed targets

TargetScanVert: mmu-miR-195a-3p
miRDB: MIMAT0017000