Mir-15-P2d

MirGeneDB ID

Hsa-Mir-15-P2d

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-195

Paralogues

Hsa-Mir-15-P1a Hsa-Mir-15-P1b Hsa-Mir-15-P1c Hsa-Mir-15-P1d Hsa-Mir-15-P2a Hsa-Mir-15-P2b Hsa-Mir-15-P2c

Orthologues

Aca-Mir-15-P2d Ami-Mir-15-P2d Bta-Mir-15-P2d Cfa-Mir-15-P2d Cin-Mir-15-P2 Cja-Mir-15-P2d Cpo-Mir-15-P2d Dno-Mir-15-P2d Dre-Mir-15-P2d Eca-Mir-15-P2d Ete-Mir-15-P2d Gja-Mir-15-P2d Laf-Mir-15-P2d Loc-Mir-15-P2d Mal-Mir-15-P2d Mdo-Mir-15-P2d Mml-Mir-15-P2d Mmr-Mir-15-P2d Mmu-Mir-15-P2d Neu-Mir-15-P2d Oan-Mir-15-P2d Ocu-Mir-15-P2d Pab-Mir-15-P2d Rno-Mir-15-P2d Sha-Mir-15-P2d Sto-Mir-15-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(hg38)

chr17: 7017627-7017687 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2d)

Mir-15-P2d chr17: 7017627-7017687 [-] UCSC Ensembl
Mir-15-P1d chr17: 7017938-7017999 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUUGUUGCCCACACCCAGCUUCCCUGGCUCUAGCAGCACAGAAAUAUUGGCACAGGGAAGCGAGUCUGCCAAUAUUGGCUGUGCUGCUCCAGGCAGGGUGGUGAAAACUACCGAGGAGGGG

Get precursor sequence

Structure

        10          20        30        40         50         
UUUGUUGCCCACACCCA--   U     G  CU          A-|         CAGGGA 
                   GCU CCCUG CU  AGCAGCACAG  AAUAUUGGCA      A
                   UGG GGGAC GA  UCGUCGUGUC  UUAUAACCGU      G
GGGGAGGAGCCAUCAAAAG   U     G  CC          GG^         CUGAGC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-15-P2d_5p

mirBase accession

MIMAT0000461

Sequence

0- UAGCAGCACAGAAAUAUUGGCA -22

Get sequence

Proposed targets

microrna.org: MIMAT0000461
TargetScanVert: hsa-miR-195-5p
TargetMiner: hsa-miR-195-5p
miRDB: MIMAT0000461

Star sequence

Hsa-Mir-15-P2d_3p*

mirBase accession

MIMAT0004615

Sequence

38- CCAAUAUUGGCUGUGCUGCUCCA -61

Get sequence

Proposed targets

microrna.org: MIMAT0004615
TargetScanVert: hsa-miR-195-3p
TargetMiner: hsa-miR-195-3p
miRDB: MIMAT0004615