Mir-15-P2c

MirGeneDB ID

Hsa-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-503

Paralogues

Hsa-Mir-15-P1a Hsa-Mir-15-P1b Hsa-Mir-15-P1c Hsa-Mir-15-P1d Hsa-Mir-15-P2a Hsa-Mir-15-P2b Hsa-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(hg38)

chrX: 134546331-134546393 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 chrX: 134540195-134540252 [-] UCSC Ensembl
Mir-450-P2 chrX: 134540358-134540414 [-] UCSC Ensembl
Mir-450-P1 chrX: 134540529-134540585 [-] UCSC Ensembl
Mir-542-v1 chrX: 134541364-134541422 [-] UCSC Ensembl
Mir-542-v2 chrX: 134541365-134541421 [-] UCSC Ensembl
Mir-15-P2c chrX: 134546331-134546393 [-] UCSC Ensembl
Mir-15-P1c chrX: 134546643-134546701 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAGACGCGGUGCCCGCGCUCAGCCGUGCCCUAGCAGCGGGAACAGUUCUGCAGUGAGCGAUCGGUGCUCUGGGGUAUUGUUUCCGCUGCCAGGGUAAGUCUGGGACUGCCGUUCGGGCCUACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GAGACGCGGUGCCCGCG--|    CCG      A              U  G   UGAGCGA 
                   CUCAG   UGCCCU GCAGCGGGAACAGU CU CAG       \
                   GGGUC   AUGGGA CGUCGCCUUUGUUA GG GUC       U
CCAUCCGGGCUUGCCGUCA^    UGA      C              U  G   UCGUGGC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-15-P2c_5p

mirBase accession

MIMAT0002874

Sequence

0- UAGCAGCGGGAACAGUUCUGCAG -23

Get sequence

Proposed targets

microrna.org: MIMAT0002874
TargetScanVert: hsa-miR-503-5p
miRDB: MIMAT0002874

Star sequence

Hsa-Mir-15-P2c_3p*

mirBase accession

MIMAT0022925

Sequence

40- GGGGUAUUGUUUCCGCUGCCAGG -63

Get sequence

Proposed targets

TargetScanVert: hsa-miR-503-3p
miRDB: MIMAT0022925