Mir-15-P2c-v1

MirGeneDB ID

Mdo-Mir-15-P2c-v1

Family name

MIR-15 (all species)

Seed

AGCAGCA

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-16b

Paralogues

Mdo-Mir-15-P1a Mdo-Mir-15-P1c-v1 Mdo-Mir-15-P1c-v2 Mdo-Mir-15-P1d Mdo-Mir-15-P2a Mdo-Mir-15-P2b Mdo-Mir-15-P2c-v2 Mdo-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mml-Mir-15-P2c Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(monDom5_add)

X: 35734297-35734357 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c-v1)

Mir-15-P2c-v2 X: 35734296-35734358 [-] UCSC Ensembl
Mir-15-P2c-v1 X: 35734297-35734357 [-] UCSC Ensembl
Mir-15-P1c-v1 X: 35734461-35734518 [-] UCSC Ensembl
Mir-15-P1c-v2 X: 35734461-35734518 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGUCUUGAGGCGCCCAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUCACAAAGUUCAAUCCUCCAGUAUUGCCUUGCUGCUUGAGUGAGGCAGGAGCCUUGUUCAAUUGCCCCA

Get precursor sequence

Structure

        10         20         30        40        50          
CGUCUUGAGGCGCCCAG-   G-|  G   CCU       CGU   A       UCACAAA 
                  CUC  GCU UGC   AGCAGCA   CAA ACUGGAG       \
                  GAG  CGG GUG   UCGUCGU   GUU UGACCUC       G
ACCCCGUUAACUUGUUCC   GA^  A   AGU       UCC   A       CUAACUU 
 .       110       100        90        80        70