MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-15-P2c-v1

Family name MIR-15 (all species)
Seed AGCAGCA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-16b
Paralogues Mdo-Mir-15-P1a  Mdo-Mir-15-P1c-v1  Mdo-Mir-15-P1c-v2  Mdo-Mir-15-P1d  Mdo-Mir-15-P2a  Mdo-Mir-15-P2b  Mdo-Mir-15-P2c-v2  Mdo-Mir-15-P2d 
Orthologues Aca-Mir-15-P2c  Ami-Mir-15-P2c  Bta-Mir-15-P2c  Cfa-Mir-15-P2c  Cin-Mir-15-P2  Cli-Mir-15-P2c  Cmi-Mir-15-P2c  Cpi-Mir-15-P2c  Cpo-Mir-15-P2c  Dno-Mir-15-P2c  Dre-Mir-15-P2c-v1  Dre-Mir-15-P2c-v2  Ete-Mir-15-P2c  Gga-Mir-15-P2c  Gja-Mir-15-P2c  Hsa-Mir-15-P2c  Lch-Mir-15-P2c  Loc-Mir-15-P2c  Mml-Mir-15-P2c  Mmu-Mir-15-P2c  Mun-Mir-15-P2c  Oan-Mir-15-P2c  Ocu-Mir-15-P2c  Pbv-Mir-15-P2c  Rno-Mir-15-P2c3  Rno-Mir-15-P2c4  Sha-Mir-15-P2c-v1  Sha-Mir-15-P2c-v2  Spt-Mir-15-P2c  Tgu-Mir-15-P2c  Xla-Mir-15-P2c1  Xla-Mir-15-P2c2  Xtr-Mir-15-P2c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(monDom5_add)
X: 35734297-35734357 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-15-P2c-v1)
Mir-15-P2c-v2 X: 35734296-35734358 [-] UCSC Ensembl
Mir-15-P2c-v1 X: 35734297-35734357 [-] UCSC Ensembl
Mir-15-P1c-v1 X: 35734461-35734518 [-] UCSC Ensembl
Mir-15-P1c-v2 X: 35734461-35734518 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCUUGAGGCGCCCAGCUCGGCUGUGCCCUAGCAGCACGUCAAAACUGGAGUCACAAAGUUCAAUCCUCCAGUAUUGCCUUGCUGCUUGAGUGAGGCAGGAGCCUUGUUCAAUUGCCCCA
Get precursor sequence
Structure
        10         20         30        40        50          
CGUCUUGAGGCGCCCAG-   G-|  G   CCU       CGU   A       UCACAAA 
                  CUC  GCU UGC   AGCAGCA   CAA ACUGGAG       \
                  GAG  CGG GUG   UCGUCGU   GUU UGACCUC       G
ACCCCGUUAACUUGUUCC   GA^  A   AGU       UCC   A       CUAACUU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-15-P2c-v1_5p

mirBase accessionMIMAT0050403
Sequence
0- UAGCAGCACGUCAAAACUGGAG -22
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Star sequence

Mdo-Mir-15-P2c-v1_3p*

mirBase accessionMIMAT0050404
Sequence
39- CCAGUAUUGCCUUGCUGCUUGA -61
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