Mir-15-P2c

MirGeneDB ID

Mml-Mir-15-P2c

Family name

MIR-15 (all species)

Seed

AGCAGCG

Species

Rhesus monkey (Macaca mulatta)

MiRBase ID

mml-mir-503

Paralogues

Mml-Mir-15-P1a Mml-Mir-15-P1b Mml-Mir-15-P1c Mml-Mir-15-P1d Mml-Mir-15-P2a Mml-Mir-15-P2b Mml-Mir-15-P2d

Orthologues

Aca-Mir-15-P2c Ami-Mir-15-P2c Bta-Mir-15-P2c Cfa-Mir-15-P2c Cin-Mir-15-P2 Cja-Mir-15-P2c Cli-Mir-15-P2c Cmi-Mir-15-P2c Cpi-Mir-15-P2c Cpo-Mir-15-P2c Dno-Mir-15-P2c Dre-Mir-15-P2c-v1 Dre-Mir-15-P2c-v2 Eca-Mir-15-P2c Ete-Mir-15-P2c Gga-Mir-15-P2c Gja-Mir-15-P2c Hsa-Mir-15-P2c Laf-Mir-15-P2c Lch-Mir-15-P2c Loc-Mir-15-P2c Mdo-Mir-15-P2c-v1 Mdo-Mir-15-P2c-v2 Mmr-Mir-15-P2c Mmu-Mir-15-P2c Mun-Mir-15-P2c Neu-Mir-15-P2c-v1 Neu-Mir-15-P2c-v2 Oan-Mir-15-P2c Ocu-Mir-15-P2c Pab-Mir-15-P2c Pbv-Mir-15-P2c Rno-Mir-15-P2c3 Rno-Mir-15-P2c4 Sha-Mir-15-P2c-v1 Sha-Mir-15-P2c-v2 Spt-Mir-15-P2c Tgu-Mir-15-P2c Xla-Mir-15-P2c1 Xla-Mir-15-P2c2 Xtr-Mir-15-P2c

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_003339765.3_Mmul_10_traces)

CM014356.1: 130810224-130810286 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-15-P2c)

Mir-450-P3 CM014356.1: 130804102-130804159 [-] UCSC Ensembl
Mir-450-P2 CM014356.1: 130804265-130804321 [-] UCSC Ensembl
Mir-450-P1 CM014356.1: 130804436-130804492 [-] UCSC Ensembl
Mir-542-v1 CM014356.1: 130805265-130805323 [-] UCSC Ensembl
Mir-542-v2 CM014356.1: 130805266-130805322 [-] UCSC Ensembl
Mir-15-P2c CM014356.1: 130810224-130810286 [-] UCSC Ensembl
Mir-15-P1c CM014356.1: 130810557-130810615 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGGACGCGGUGCCCGCGCUCAGCCGUGCCCUAGCAGCGGGAACAGUUCUGCAGUGAGUGAUCAGUACUCUGGAGUAUUGUUUCCGCUGCCAGGGUAAGUCUGGGACUGCCGUUCGGGCCUACC

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGGACGCGGUGCCCGCG--|    CCG      A              U  G   UGAGUGA 
                   CUCAG   UGCCCU GCAGCGGGAACAGU CU CAG       \
                   GGGUC   AUGGGA CGUCGCCUUUGUUA GA GUC       U
CCAUCCGGGCUUGCCGUCA^    UGA      C              U  G   UCAUGAC 
 120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bo	Br	Br	Br	He	Ki	Li	Lu	Ly	Sk	Sp	Te	Th

Mature sequence

Mml-Mir-15-P2c_5p

mirBase accession

MIMAT0006367

Sequence

0- UAGCAGCGGGAACAGUUCUGCAG -23

Get sequence

Proposed targets

TargetScanVert: mml-miR-503-5p

Star sequence

Mml-Mir-15-P2c_3p*

mirBase accession

MIMAT0026890

Sequence

40- GGAGUAUUGUUUCCGCUGCCAGG -63

Get sequence

Proposed targets

TargetScanVert: mml-miR-503-3p